PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009589175.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 835aa MW: 94513.8 Da PI: 5.5678

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009589175.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	50	6e-16	646	690	4	48
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 is ++l+++F +++ dAAk+Lgv ++LKr CR y I RWP+ k XP_009589175.1 646 GISRSVLEEQFGKKLSDAAKSLGVARSTLKRMCRDYDIYRWPRSK 690 6999**************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.843	631	716	IPR003035	RWP-RK domain
Gene3D	G3DSA:1.10.10.60	2.7E-4	632	682	IPR009057	Homeodomain-like
Pfam	PF02042	4.2E-13	647	690	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.2E-17	748	833	No hit	No description
SMART	SM00666	2.4E-15	751	834	IPR000270	PB1 domain
PROSITE profile	PS51745	18.234	751	835	IPR000270	PB1 domain
Pfam	PF00564	7.7E-15	752	833	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.8E-15	753	832	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 835 aa Download sequence Send to blast
MRERKRGDGI NRWVFWTQHN GDELNQVKSL FPVLRGYEFE PWKQPPVEMQ GDSTQPDTNG 60 DSQLNRLTIK NLVELLDVQG TCLIQFWAPI RINSGKTFLT TADQPFAFNG KIHEGLWAYR 120 RVSLLTIASV DSTEIDETKR VHVHGRPARV FRSGMPEFSP HVRYYYMDEY PLRNFAMCLG 180 VGSYWTLPVF ESSGDRCIGV LEYAFEANVG LDLYSTLDCL INNHRILKTM GLALIPSWLA 240 CSQEIQEVWE QELAKVKEAL EVTCKTHRLL FAQTWISVLD SSRTQMLITS PPTKYWSEEI 300 TSLEFLAVSD LHHVRIGQGL VGKVLSSKGS CFCRDITQLS IDFYPFVPIA RCAGFTACFA 360 IFVRLNSACH MVLEFFLPND ETLDRNPQSF LSKLLATIRE QLPSFFLDSG PSLFVEVIRT 420 APVDELDSFE ISQLQQGVRS KGNEKMVLFD SLNQDSADLG PSSSTDIGAH HMEIAKDTPD 480 NGEETVLPDS AHKQGVEEAD AMDKEKSSVD FILATSFAVS EKKLQQNLST DKASLDEKLD 540 SFEIGHRQLP SMVQYDTINQ IFGFDPSSSS DLEEIITADY GRDTQLNLQS KKRGESTQPD 600 LAHQQRVEEA DVGDKRRHSV HVEENANSHN CPEKHKRIKR IEKEYGISRS VLEEQFGKKL 660 SDAAKSLGVA RSTLKRMCRD YDIYRWPRSK SANDVCSLSE NKPVKRVENQ TGNSSREDLQ 720 LPHAGLSNGM DTTTTLTQRK KPTATFQSDN AMSVKVTYKD VTIRFPFSLS SGKIDLETEV 780 EKRLKLVLIG SYSIKYEDED NDWIAITCDS DLEYGMHTLR SLGRTTMKML VEPLN

Sequence ? help Back to Top

Protein Sequence Length: 835 aa Download sequence Send to blast

MRERKRGDGI NRWVFWTQHN GDELNQVKSL FPVLRGYEFE PWKQPPVEMQ GDSTQPDTNG  60
DSQLNRLTIK NLVELLDVQG TCLIQFWAPI RINSGKTFLT TADQPFAFNG KIHEGLWAYR  120
RVSLLTIASV DSTEIDETKR VHVHGRPARV FRSGMPEFSP HVRYYYMDEY PLRNFAMCLG  180
VGSYWTLPVF ESSGDRCIGV LEYAFEANVG LDLYSTLDCL INNHRILKTM GLALIPSWLA  240
CSQEIQEVWE QELAKVKEAL EVTCKTHRLL FAQTWISVLD SSRTQMLITS PPTKYWSEEI  300
TSLEFLAVSD LHHVRIGQGL VGKVLSSKGS CFCRDITQLS IDFYPFVPIA RCAGFTACFA  360
IFVRLNSACH MVLEFFLPND ETLDRNPQSF LSKLLATIRE QLPSFFLDSG PSLFVEVIRT  420
APVDELDSFE ISQLQQGVRS KGNEKMVLFD SLNQDSADLG PSSSTDIGAH HMEIAKDTPD  480
NGEETVLPDS AHKQGVEEAD AMDKEKSSVD FILATSFAVS EKKLQQNLST DKASLDEKLD  540
SFEIGHRQLP SMVQYDTINQ IFGFDPSSSS DLEEIITADY GRDTQLNLQS KKRGESTQPD  600
LAHQQRVEEA DVGDKRRHSV HVEENANSHN CPEKHKRIKR IEKEYGISRS VLEEQFGKKL  660
SDAAKSLGVA RSTLKRMCRD YDIYRWPRSK SANDVCSLSE NKPVKRVENQ TGNSSREDLQ  720
LPHAGLSNGM DTTTTLTQRK KPTATFQSDN AMSVKVTYKD VTIRFPFSLS SGKIDLETEV  780
EKRLKLVLIG SYSIKYEDED NDWIAITCDS DLEYGMHTLR SLGRTTMKML VEPLN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009589173.1	0.0	PREDICTED: protein NLP7-like isoform X1
TrEMBL	A0A1U7WUY0	0.0	A0A1U7WUY0_NICSY; protein NLP7-like isoform X4
STRING	XP_009589173.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	3e-41	NIN like protein 7