PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009589439.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 191aa    MW: 21785.5 Da    PI: 5.1405
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009589439.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-2053102355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+++AeIrd s+++ + r++lg+f+taeeAa a+++a+ +l+g
  XP_009589439.1  53 YRGVRRRP-WGKYAAEIRD-STRN-SVRVWLGTFDTAEEAALAYDQAAFALHG 102
                     9*******.**********.3433.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.15E-3151112No hitNo description
PROSITE profilePS5103223.36752110IPR001471AP2/ERF domain
PfamPF008471.5E-1452102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-3052110IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2452112IPR016177DNA-binding domain
SMARTSM003807.2E-3652116IPR001471AP2/ERF domain
PRINTSPR003671.8E-115364IPR001471AP2/ERF domain
PRINTSPR003671.8E-117692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDYSRYNHLG FNENDTEDML LLDVLSEAGE SSSNNLHFNK QETHFKHNEG ANYRGVRRRP  60
WGKYAAEIRD STRNSVRVWL GTFDTAEEAA LAYDQAAFAL HGTMAVLNFP VDIVYQSLME  120
MECGFEEGCS PVLVLKKMHS MKKGKSNNIH RKKKEKEMSF ENVLVLEDLG ADYLEEILRL  180
SEGCCDPSMS C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2852113263ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A8e-28491101172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150155RKKKEK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755232e-92HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589439.11e-143PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y94e-65ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A1S3ZGV71e-140A0A1S3ZGV7_TOBAC; ethylene-responsive transcription factor 1B-like
STRINGXP_009589439.11e-142(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.16e-45ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]