PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009590000.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 468aa    MW: 51501.6 Da    PI: 8.2888
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009590000.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.22.6e-15108167155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_009590000.1 108 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 167
                     57*******************666664477446*************************98 PP
2AP247.44.7e-15210261155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_009590000.1 210 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 261
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-15108175IPR016177DNA-binding domain
CDDcd000182.44E-20108177No hitNo description
PfamPF008472.6E-12108167IPR001471AP2/ERF domain
SMARTSM003801.9E-27109181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-14109175IPR001471AP2/ERF domain
PROSITE profilePS5103218.439109175IPR001471AP2/ERF domain
PRINTSPR003672.2E-6110121IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-18210271IPR016177DNA-binding domain
CDDcd000181.46E-25210271No hitNo description
PfamPF008475.8E-10210261IPR001471AP2/ERF domain
SMARTSM003807.9E-34211275IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-18211269IPR001471AP2/ERF domain
PROSITE profilePS5103219.045211269IPR001471AP2/ERF domain
PRINTSPR003672.2E-6251271IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDMDSSSENW LGFSLSNINS NNSNANNNSS INLPSNNASE LCLFQAFNSN PNSGVEENGK  60
CTDELKTIAA SFLRSFSADQ NNSQNKQLAV VALPPAKKSV ETFGQRTSIY RGVTRHRWTG  120
RYEAHLWDNS CRREGQSRKG RQVYLGGYDK EEKAARAYDL AALKYWGPTT TTNSPVLNYE  180
KELEEMKSMT RQEFVASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG  240
TFSTQEEAAE AYDIAAIKFR GLNAVTNFDI SRYDVKSIAS SNLPVGGMNN KSKTSSESAA  300
SESSKNVQGN RSDDRDISSA TSAPLISSQA PNMVNLGFGL PIKQDASDFW SILGYTNDQN  360
NGSKNPSANA TFFHGPPIQA QGTTLFRMDL PATTTSLNEV NSNQVIFNEE GYYHQQQQSG  420
SCSTITSVPS DTTTTLDGSN FGNWMPPSLH SFQTTAKNPF QTPIFGME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009590000.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 isoform X1
RefseqXP_016485713.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 isoform X1
SwissprotQ6PQQ31e-142AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A1S4BA880.0A0A1S4BA88_TOBAC; AP2-like ethylene-responsive transcription factor AIL5 isoform X1
STRINGXP_009590000.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22462457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-133AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]