PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009590142.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 146aa    MW: 16691.6 Da    PI: 9.2351
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009590142.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-192677256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr+++ +g+++AeIrdp+ +g  +r +lg+f+ ae+Aa+a+++a+ +l+g+
  XP_009590142.1 26 KYRGVRRRP-WGKFAAEIRDPTRQG--ARQWLGTFDKAEDAARAYDKAAFNLRGH 77
                    8********.**********96544..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.0E-312686IPR001471AP2/ERF domain
CDDcd000181.50E-292685No hitNo description
PfamPF008471.0E-122677IPR001471AP2/ERF domain
PROSITE profilePS5103223.7622684IPR001471AP2/ERF domain
SMARTSM003801.5E-352690IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-232685IPR016177DNA-binding domain
PRINTSPR003676.3E-102738IPR001471AP2/ERF domain
PRINTSPR003676.3E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MEGSSPKGKK AMQEKESGNK GKEEIKYRGV RRRPWGKFAA EIRDPTRQGA RQWLGTFDKA  60
EDAARAYDKA AFNLRGHLAT LNFPNEYYSK LSNPPYHYRT TSFNIINPIR RGLEKGSSSI  120
GNQDKEIIEF EYLDDSVLEE LLGSEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-30211379114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016495179.11e-105PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-44ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1S4C2A51e-103A0A1S4C2A5_TOBAC; ethylene-responsive transcription factor ERF098-like
STRINGXP_009590142.11e-104(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.17e-38ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]