PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009590867.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LSD
Protein Properties Length: 102aa    MW: 10594.3 Da    PI: 6.6996
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009590867.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.16.9e-142852125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr+lL YP GA+sV+Ca+C++V
  XP_009590867.1 28 CSGCRNLLLYPVGATSVCCAVCNAV 52
                    ************************9 PP
2zf-LSD147.62.7e-156791125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggC+tlL+Y rGA+sV+C++C+tV
  XP_009590867.1 67 CGGCHTLLMYIRGATSVQCSCCHTV 91
                    ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.2E-132555IPR005735Zinc finger, LSD1-type
PfamPF069437.9E-112852IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.6E-156493IPR005735Zinc finger, LSD1-type
PfamPF069437.3E-136791IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MPVPLAPYPT PPTPFTPPAN GTQSQLVCSG CRNLLLYPVG ATSVCCAVCN AVTAVPPPGT  60
EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLAMEGFNE HN
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0107871e-48AP010787.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0012J05, complete sequence.
GenBankHG9754471e-48HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755201e-48HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009590867.11e-67PREDICTED: protein LOL1 isoform X4
SwissprotQ93ZB11e-48LOL1_ARATH; Protein LOL1
TrEMBLA0A1S3Y3N53e-61A0A1S3Y3N5_TOBAC; protein LOL1 isoform X1
TrEMBLA0A1S3Y3P13e-61A0A1S3Y3P1_TOBAC; protein LOL1 isoform X2
TrEMBLM1BH574e-61M1BH57_SOLTU; Uncharacterized protein
STRINGXP_009590862.15e-62(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.37e-35lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]