PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009590895.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 545aa    MW: 61971.3 Da    PI: 9.2482
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009590895.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00094482504123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C+++F++   L  H r+H
  XP_009590895.1 482 HECPFCNRMFKSGQALGGHKRSH 504
                     78******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.6936IPR007087Zinc finger, C2H2
SMARTSM003550.78931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PfamPF139120.00111131IPR007087Zinc finger, C2H2
SMARTSM003550.075100122IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.533100127IPR007087Zinc finger, C2H2
SuperFamilySSF576676.61E-7101122No hitNo description
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
PfamPF139121.7E-7102124IPR007087Zinc finger, C2H2
SuperFamilySSF576676.61E-7402426No hitNo description
SMARTSM00355230407427IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-6407426IPR007087Zinc finger, C2H2
PROSITE profilePS501579.452482504IPR007087Zinc finger, C2H2
SMARTSM003550.028482504IPR015880Zinc finger, C2H2-like
PfamPF139126.6E-9482504IPR007087Zinc finger, C2H2
PROSITE patternPS000280484504IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MEEDQDLKYF CKLCNKRYPC GKSFGGHMRS HVLSNSAKLE EKVELKHKKV QSWINLGKKN  60
SKRDHKSKFE LGENSGYGLR DNPKKTWRAV DSRSPLPQEN VCQQCGKVFQ SLKALCGHMA  120
CHSGKDKGSK DDHSWTSENK NIAMDSNSDT EAEEPIMLRS RSKIKRYNKS KSSSFCLVNN  180
RSFSSSVSEI DEQDQEEVAK CLMMLSMDSG KWNGVINSVV ESSDNNSVVF ESKSSSVDMR  240
ISRKDSLKCA DNVDGTPRSK KKADRNLTLN VLSAEVQSEN SDSGYFLDDY MNVESDASVD  300
EFHRKHNYQR NTSNKSHGVW CDESRIDEGK DLNRMKKCIT ELRNASSKDY KYDSYGMTSN  360
LVKCESRKRN KDSSYHSELG NESFNNKKIN LGLKGAEGIK HTQKKKYECF NCKKTFSSYQ  420
ALGGHRPCTK KTNAYIESKY ETNENNRDAD RETFSNKKPV AHARDLSYNP EKKMKAKKFK  480
GHECPFCNRM FKSGQALGGH KRSHFITGSQ YQASAFKREV VDLLDLNLPA PVEDVNGEPA  540
FVSSW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009590895.10.0PREDICTED: uncharacterized protein LOC104087998
TrEMBLA0A1S3X0U50.0A0A1S3X0U5_TOBAC; uncharacterized protein LOC107760031
STRINGXP_009590895.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-41C2H2-like zinc finger protein