PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009591053.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 241aa    MW: 25649.5 Da    PI: 8.9622
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009591053.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.4e-203180255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++ +gr++AeIrdp +   + r++lg+f+taeeAa+ ++aa+++++g
  XP_009591053.1 31 HYRGVRKRP-WGRYAAEIRDPLK---NSRVWLGTFDTAEEAARVYDAAAREFRG 80
                    6********.**********865...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.04E-313188No hitNo description
PROSITE profilePS5103223.8283188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-313188IPR001471AP2/ERF domain
SMARTSM003801.3E-373194IPR001471AP2/ERF domain
PfamPF008472.0E-123180IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-223189IPR016177DNA-binding domain
PRINTSPR003676.4E-113243IPR001471AP2/ERF domain
PRINTSPR003676.4E-115470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEHNEKGGAA VTVTVPAAEI VNGGGVSKKV HYRGVRKRPW GRYAAEIRDP LKNSRVWLGT  60
FDTAEEAARV YDAAAREFRG TKAKTNFPPP AVIKDSSPAP LNLNLGSGSS VGSARSFTYL  120
KQNNLNLGGG SSVGSAASFT YLKQNYQFRH VPAAGGFAPP SARDYQYLEA LTGAEVSNRD  180
PSSQRGTVAF LGGGDSVSGC GIPTESESSS VLNYNFNDLN QPTITTNCLN LDLNLPPPDY  240
M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-222788163ATERF1
3gcc_A6e-222788163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6690830.0AB669083.1 Nicotiana tabacum NtERF#206 gene for ethylene response factor #206, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009591053.11e-178PREDICTED: ethylene-responsive transcription factor 8-like
RefseqXP_016506469.11e-178PREDICTED: ethylene-responsive transcription factor 8-like
TrEMBLR4WAR71e-177R4WAR7_TOBAC; Ethylene response factor #206
STRINGXP_009591053.11e-177(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1519557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-24erf domain protein 9