PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009591120.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 234aa MW: 26764.1 Da PI: 8.4964

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009591120.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.4	8.4e-10	43	93	13	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 NR +A rs +RK +i eLe+kv++L++e ++L +l l+ l++e+ XP_009591120.1 43 NRQSAARSKERKMRYITELERKVQTLQTETTTLSAQLTLLQRDTNGLTAEN 93 **************************************9999888877776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.7E-9	28	95	IPR004827	Basic-leucine zipper domain
CDD	cd14703	6.01E-15	39	85	No hit	No description
SuperFamily	SSF57959	2.81E-10	39	86	No hit	No description
PROSITE profile	PS50217	9.749	39	96	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.9E-10	42	89	No hit	No description
Pfam	PF00170	9.1E-8	42	89	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MAQYSKLSLV VPVELFVSLK TNLQLYSLSS LSLFMLCNRI WANRQSAARS KERKMRYITE 60 LERKVQTLQT ETTTLSAQLT LLQRDTNGLT AENSELKLRL QTMEQQVHLQ DALNDALKEE 120 IQHLKVLTGQ GIANGGPMMN FPTSFGGNQQ YYSNNHAMHT LLAAQQLQQL QIHSHKQQHQ 180 FQQHQLHQFQ QQQQLQHQQQ LQEQLHQAGD MNSRSSLSSP QNDNASDTSA ISKD

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013485	0.0	BT013485.1 Lycopersicon esculentum clone 132168R, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009591120.1	1e-169	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	2e-64	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A1S3X310	1e-136	A0A1S3X310_TOBAC; probable transcription factor PosF21
STRING	XP_009591120.1	1e-168	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3965	21	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	5e-49	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]