PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009591217.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 657aa    MW: 75056.6 Da    PI: 7.7582
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009591217.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249.1e-08553599247
                      SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+e+++d v+   +    Wk   + ++  +t+++++s+++++
   XP_009591217.1 553 LSWTAEEEERFKDMVRSSSTSnnKWKNSKKLLP-SKTRNMLVSYYFNV 599
                      68**************99988999***999999.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010147.6E-1035127No hitNo description
PROSITE profilePS5101118.01938131IPR001606ARID DNA-binding domain
SMARTSM005011.4E-1439132IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.602.0E-1441132IPR001606ARID DNA-binding domain
SuperFamilySSF467744.06E-1843132IPR001606ARID DNA-binding domain
PfamPF013885.8E-1160127IPR001606ARID DNA-binding domain
PROSITE profilePS511569.67453601IPR000949ELM2 domain
PROSITE profilePS500906.005554600IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-4554599IPR009057Homeodomain-like
CDDcd001672.41E-4554600No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MEAWSSLNDE SQVYKGNQSG SGINLTVEVN GIDGCSKNRL KSLFDQVLSV FLSEVTEKKC  60
VRPLPVMTGS GKPLDLFKLY WIVRKIGGYD RVSSKNLWGF IAEHCGLDVG AVAFVKLVYV  120
KYLAEFDHWL RQLCKEGNLE KREGGVVRRL DLLSKELETR FRRLLLRRCQ KKKDANLLPS  180
KNGQVDFEML TTESVNKTND YTTRRSYNAE NRNGNLYNGD ERSVSKIDDD YVFLASAEGI  240
VEKVLYKAPE KSNNEYDDDE KFFARDGKNK VTSNGEVIQR AASAMSVIEN VFGSRKRKRE  300
SSCFSGMLNW INHAAKHSND PEIGEVPESS KWKGHTSNEF WFQVLLVKEA LLKRRHTDTN  360
AEESNPQKKQ RMHPFMYEER LNNQPAEKLR CSKRIPVSPK HVPCPCCNSC STSQNKASTH  420
QKEEEQDTGP DLTSIEVSVT EKTDDLGDQQ THPEVSVGPL HQAEVPEWSG VISESDSKWL  480
GTRMWPPEVE TTKSLVELDP IGEGRRSSCG CRFPQSVECI RFHIAEKRFK LKLELGPLFN  540
RWRFDRMGEE VSLSWTAEEE ERFKDMVRSS STSNNKWKNS KKLLPSKTRN MLVSYYFNVF  600
LIRRRSYQNR VTPKELDSDD DEIELGSVGD SFGNIAVHVP SSRSLTCVEN KVCTDLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161172RRLLLRRCQKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6171811e-93AJ617181.1 Nicotiana plumbaginifolia cDNA-AFLP fragment, clone Np407.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009591217.10.0PREDICTED: AT-rich interactive domain-containing protein 2 isoform X2
TrEMBLA0A1S4DPF90.0A0A1S4DPF9_TOBAC; AT-rich interactive domain-containing protein 2-like isoform X2
STRINGXP_009591214.10.0(Nicotiana tomentosiformis)