PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009591257.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 163aa    MW: 18865.2 Da    PI: 7.8819
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009591257.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.44.3e-37391312103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d+++++++sws+ +nsf+v+d+++f+ ++Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll+ 
  XP_009591257.1  39 FLTKTYELVDDPNTNDIVSWSRGNNSFIVWDPQTFSMNLLPRYFKHSNFSSFVRQLNTYGFRKVNPDQ---------WEFANEGFLRGQRHLLKA 124
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  XP_009591257.1 125 IRRRKTS 131
                     ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3932123IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.53E-3634128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5935128IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.2E-3239128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-203962IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-2090102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MDPSFAPIKE EVPGSNEPSS FMWIPQPMEG LHENGPPPFL TKTYELVDDP NTNDIVSWSR  60
GNNSFIVWDP QTFSMNLLPR YFKHSNFSSF VRQLNTYGFR KVNPDQWEFA NEGFLRGQRH  120
LLKAIRRRKT SNFHPSQASN KGIDSYIELG KLELDVLSKY THA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-273713118123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755217e-92HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009591257.11e-119PREDICTED: heat stress transcription factor A-6b-like, partial
SwissprotQ9LUH82e-66HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1S3X2601e-109A0A1S3X260_TOBAC; heat stress transcription factor A-6b-like
STRINGXP_009591257.11e-118(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-68heat shock transcription factor A6B