PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009591396.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 554aa    MW: 60115.5 Da    PI: 6.8482
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009591396.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.5e-16348394455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  XP_009591396.1 348 VHNLSERRRRDRINEKMRALQELIPRC-----NKTDKASMLDEAIEYLKSLQ 394
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-21342411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.355344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.66E-17347398No hitNo description
Gene3DG3DSA:4.10.280.106.4E-21348402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-13348394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-18350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MNHSVPDFDM DGDYTIPTSS GLTRPKKSAM VEDDIMELLW HNGQVVMQSQ NQRSLKKSHI  60
SNGGGSGDAL IPSEQAVSRE IRHVEETTTP QQLFMQEDEM ASWLHYPLDD SSFERDLYAD  120
LLYSTPSATV TTAALPREIR TPTVEIRPPP PQPSPAAPIA VAPRPPIPPP ARRPGTESSH  180
RFQNFGHFSR LPSRTRSELG PSNSSKSPRE STVVESNETP ISGPESRVSY VADNVVPVPG  240
GNVGCGAVNV NGTATASTAI REPAATCELS VTSSPGSGNS INTSAEPPPS QTAALATPTA  300
AASNDRKRKG RETNDGDGQN EEAEFESGDT KKHARGSAST KRSRAAEVHN LSERRRRDRI  360
NEKMRALQEL IPRCNKTDKA SMLDEAIEYL KSLQLQVQMM SMGCGMVPMM YPGMQQYMPA  420
MGMGMGMGMG MEIGMNRPMV PYPPLLPGAA MQNAAAAARM GPRFPMPPFH LPPVPVPDPS  480
RMQASSQQDP MLHPLVAHNP NQPRLPNFND PYQQFFGLHQ AQVQLPQNQA VEQQGNNKPG  540
SRKEVGNPGN PQSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352357ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009591396.10.0PREDICTED: transcription factor PIF1-like
TrEMBLA0A1J6JNV30.0A0A1J6JNV3_NICAT; Transcription factor pif1
STRINGXP_009591396.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.34e-57phytochrome interacting factor 3-like 5