PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009591799.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 182aa    MW: 20015.3 Da    PI: 5.1797
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009591799.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY42.21.6e-131392358
                    EEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY 23 sYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58
                    +YYrCt++   +Cp+kk+v+r ++dp v+e+tY+++H++
  XP_009591799.1  1 AYYRCTHQklyNCPAKKQVQRLDDDPYVFEVTYRSQHTC 39
                    6*******999**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081110.866137IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-11140IPR003657WRKY domain
SMARTSM007745.5E-8141IPR003657WRKY domain
PfamPF031067.1E-12239IPR003657WRKY domain
SuperFamilySSF1182901.83E-11241IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
AYYRCTHQKL YNCPAKKQVQ RLDDDPYVFE VTYRSQHTCY MSATAPTVPP PSVEEITRQT  60
TTTLPPYLPL PPPTSASLSA HWLSMDIKPQ RDQGTSTIPF DIQRDFGHST GGSLASICNM  120
VSTGGGSAGP SGGRYGREVD YQLPVVDMAD AMFNFSGSSS NNSMDIIFSS IDDKWDSAEK  180
KE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-96HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016448796.11e-133PREDICTED: WRKY transcription factor 55-like
TrEMBLA0A1S3Y8X61e-132A0A1S3Y8X6_TOBAC; WRKY transcription factor 55-like
STRINGXP_009591799.11e-134(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92801824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.29e-24WRKY DNA-binding protein 55