PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009592003.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CAMTA
Protein Properties Length: 1000aa    MW: 112042 Da    PI: 6.6289
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009592003.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.61.2e-53511653116
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e + rwl++ e++ iL+n+e  +l+++++++p sgs++L+n++++ryfrkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+np+fqr
  XP_009592003.1  51 REgHFRWLRPAEVVFILQNHEDQQLANQPPQKPASGSMFLFNKRVLRYFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYAHGEKNPNFQR 145
                     55588****************************************************************************************** PP

            CG-1  97 rcywlLeeelekivlvhyle 116
                     r+yw+L+ ++e+ivlvhy++
  XP_009592003.1 146 RSYWMLDPAYEHIVLVHYRD 165
                     ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.61346172IPR005559CG-1 DNA-binding domain
SMARTSM010766.9E-7449167IPR005559CG-1 DNA-binding domain
PfamPF038591.4E-4754165IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.1E-9438525IPR013783Immunoglobulin-like fold
PfamPF018335.1E-8441516IPR002909IPT domain
SuperFamilySSF812963.78E-18441525IPR014756Immunoglobulin E-set
CDDcd001026.79E-6441525No hitNo description
Gene3DG3DSA:1.25.40.204.3E-13640734IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.408640732IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.37E-14644734IPR020683Ankyrin repeat-containing domain
CDDcd002044.58E-12645732No hitNo description
PfamPF127966.9E-7660733IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.843673705IPR002110Ankyrin repeat
SMARTSM0001564790812IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.876791820IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.92E-6827897IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.63849871IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.51850879IPR000048IQ motif, EF-hand binding site
PfamPF006120.0012852870IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0013872894IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.883874898IPR000048IQ motif, EF-hand binding site
PfamPF006122.4E-5875894IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1000 aa     Download sequence    Send to blast
MSLVHHKKQD LSLSLSKWSI NDGAIFQALF IIPLLCLNFQ QKRYNINDLV REGHFRWLRP  60
AEVVFILQNH EDQQLANQPP QKPASGSMFL FNKRVLRYFR KDGHSWRKKK DGRTVGEAHE  120
RLKVGNAEAL NCYYAHGEKN PNFQRRSYWM LDPAYEHIVL VHYRDITEIA AFMSQSSPIS  180
STFSLSPSLY STQHPGFTVF GSESYQQYPN ESSPGSGEVC SDAGINGKGM NISDITGRTE  240
GVSSSPRVEI SQALRKLEEQ LSLNDDSLEQ IDPLYSEIEN SDDVENFVHD NNSLVQIQHK  300
SNNLLLQPHS GESSESQHQL LNLDGNIWKE MLDHCRSFPA AESPAKCFEK LDENGTLQTS  360
SGVGPIEATE SDRWLKFGGK ALKSSLTNFK QVEDFKYPAC ARINTYGSYS DQYTTIFDQD  420
QIGTSFEDDM SLTIAQKQKF TIHDISPDWG YSSEATKIVI VGSFLCNPSE YTWTCMFDDI  480
EVPVQIINEG AIRCQAPPHL PCKVTLCVTT GNRVSCSEVW EFEYRVKFDD HGQKNLAEVG  540
GACKSSEELL LLVRFVQMLL SDSSVQKGDG SGSSNDILEN SKASEDSWSQ VIESLLFGTS  600
TSMVTVDWLL QELLKDRLKQ WLSSKLQVKN NQMGYSFSRK EQGIIHMVAG LGFEWALHPI  660
LDAGVGVNFR DINGWTALHW AARFGREKMV ASLVASSAFA GAVTDPSSQD PFGRTAASIA  720
SSCGHKGVAG YLSEVALTSH LSSLTLEENE LSKGTADVEA ERTISSISTT SAATHEDQLS  780
LKDTLAAVRN AAQAAARIQS AFRAHSFRKR RQREAARAAT TSGDEYCVLS NDVLGLSAAS  840
KLAFRNMRDY NSAALAIQKK YRGWKCRKDF LAFRQKVVKI QAHVRGYQVR KEYKVCWAVG  900
ILEKVVLRWR RRGVGLRGFR LEEEPIEESE DEDILKLFRK QKVDAAINEA VSRVLSMVDS  960
PEARQQYHRI LEKYRQAKAE LGVKSDTVST AHGDMENSDI
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5660470.0JN566047.1 Solanum lycopersicum calmodulin-binding transcription factor SR2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018623913.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A1S4D2Z90.0A0A1S4D2Z9_TOBAC; calmodulin-binding transcription activator 4-like isoform X2
STRINGXP_009592002.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]