PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009592005.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CAMTA
Protein Properties Length: 951aa    MW: 106652 Da    PI: 6.6758
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009592005.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1154.42.5e-48511543105
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e + rwl++ e++ iL+n+e  +l+++++++p sgs++L+n++++ryfrkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+np+fqr
  XP_009592005.1  51 REgHFRWLRPAEVVFILQNHEDQQLANQPPQKPASGSMFLFNKRVLRYFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYAHGEKNPNFQR 145
                     55588****************************************************************************************** PP

            CG-1  97 rcywlLeee 105
                     r+yw+L+ e
  XP_009592005.1 146 RSYWMLDPE 154
                     ******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143765.43246176IPR005559CG-1 DNA-binding domain
SMARTSM010767.6E-6149160IPR005559CG-1 DNA-binding domain
PfamPF038598.1E-4254154IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.0E-9389476IPR013783Immunoglobulin-like fold
PfamPF018334.8E-8392467IPR002909IPT domain
CDDcd001026.40E-6392476No hitNo description
SuperFamilySSF812963.5E-18392476IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.204.1E-13591685IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.408591683IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.91E-14595685IPR020683Ankyrin repeat-containing domain
CDDcd002044.28E-12596683No hitNo description
PfamPF127966.5E-7611684IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.843624656IPR002110Ankyrin repeat
SMARTSM0001564741763IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.876742771IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.45E-6778848IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.63800822IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.51801830IPR000048IQ motif, EF-hand binding site
PfamPF006120.0011803821IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0013823845IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.883825849IPR000048IQ motif, EF-hand binding site
PfamPF006122.2E-5826845IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 951 aa     Download sequence    Send to blast
MSLVHHKKQD LSLSLSKWSI NDGAIFQALF IIPLLCLNFQ QKRYNINDLV REGHFRWLRP  60
AEVVFILQNH EDQQLANQPP QKPASGSMFL FNKRVLRYFR KDGHSWRKKK DGRTVGEAHE  120
RLKVGNAEAL NCYYAHGEKN PNFQRRSYWM LDPESYQQYP NESSPGSGEV CSDAGINGKG  180
MNISDITGRT EGVSSSPRVE ISQALRKLEE QLSLNDDSLE QIDPLYSEIE NSDDVENFVH  240
DNNSLVQIQH KSNNLLLQPH SGESSESQHQ LLNLDGNIWK EMLDHCRSFP AAESPAKCFE  300
KLDENGTLQT SSGVGPIEAT ESDRWLKFGG KALKSSLTNF KQVEDFKYPA CARINTYGSY  360
SDQYTTIFDQ DQIGTSFEDD MSLTIAQKQK FTIHDISPDW GYSSEATKIV IVGSFLCNPS  420
EYTWTCMFDD IEVPVQIINE GAIRCQAPPH LPCKVTLCVT TGNRVSCSEV WEFEYRVKFD  480
DHGQKNLAEV GGACKSSEEL LLLVRFVQML LSDSSVQKGD GSGSSNDILE NSKASEDSWS  540
QVIESLLFGT STSMVTVDWL LQELLKDRLK QWLSSKLQVK NNQMGYSFSR KEQGIIHMVA  600
GLGFEWALHP ILDAGVGVNF RDINGWTALH WAARFGREKM VASLVASSAF AGAVTDPSSQ  660
DPFGRTAASI ASSCGHKGVA GYLSEVALTS HLSSLTLEEN ELSKGTADVE AERTISSIST  720
TSAATHEDQL SLKDTLAAVR NAAQAAARIQ SAFRAHSFRK RRQREAARAA TTSGDEYCVL  780
SNDVLGLSAA SKLAFRNMRD YNSAALAIQK KYRGWKCRKD FLAFRQKVVK IQAHVRGYQV  840
RKEYKVCWAV GILEKVVLRW RRRGVGLRGF RLEEEPIEES EDEDILKLFR KQKVDAAINE  900
AVSRVLSMVD SPEARQQYHR ILEKYRQAKA ELGVKSDTVS TAHGDMENSD I
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5660470.0JN566047.1 Solanum lycopersicum calmodulin-binding transcription factor SR2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018623916.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X5
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A1S4D3830.0A0A1S4D383_TOBAC; calmodulin-binding transcription activator 4-like isoform X3
STRINGXP_009592002.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]