PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009592418.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 170aa    MW: 19543.9 Da    PI: 9.8199
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009592418.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer61.61.7e-191391759
     ZF-HD_dimer 17 lGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                    +Ggh +DGCg fmpse+      alkCaAC+CHRnFHRre+ +
  XP_009592418.1  1 MGGHILDGCGKFMPSEE----EGALKCAACNCHRNFHRRETFS 39
                    7*************944....46****************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015663.1E-17136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152318.913136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-11150IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.9E-17137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.08E-1996167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-2997168IPR009057Homeodomain-like
PROSITE profilePS500718.762104168IPR001356Homeobox domain
TIGRFAMsTIGR015651.3E-27106163IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MGGHILDGCG KFMPSEEEGA LKCAACNCHR NFHRRETFSE AETQIARPRP PYSTFNPPIH  60
SSSNYHHNYS TASPVMMTFG RNAESSSEDL NLFNSNAGGG QSSKSKKRFR TKFTAEQKER  120
MHEFAEKVGW SIQKQDEQEL QHFCNQVGVK RQVFRIWMHN SKQANKKRQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-211051621673ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592418.11e-127PREDICTED: zinc-finger homeodomain protein 5-like
SwissprotQ9ZPW79e-45ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A1S4AF531e-124A0A1S4AF53_TOBAC; zinc-finger homeodomain protein 2-like
STRINGXP_009592418.11e-126(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.11e-38homeobox protein 24