PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009592467.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-PHD
Protein Properties Length: 740aa    MW: 81950.3 Da    PI: 5.3408
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009592467.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.81.8e-13561611555
                     SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      t+ +  +++L e F++n+yp+++++e+L k+lgLt  qV+ WF N R  +
  XP_009592467.1 561 KTYGEGAIKRLYESFKENQYPDRDAKEKLGKELGLTAHQVSKWFENARHCH 611
                     566777899**************************************9755 PP
2PHD37.26.6e-13215270151
                     SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ C++    ++++++lCdg C++ fH+ Cl+++l +e++p +   wlC+ C++k
  XP_009592467.1 215 FCAKCSAkdLPADNDIILCDGaCERGFHQLCLEPPLLKEDIPPDdeGWLCPGCDCK 270
                     699999966566********66*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579037.31E-13206273IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.3E-12212270IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.905213270IPR019787Zinc finger, PHD-finger
PfamPF006282.0E-10215270IPR019787Zinc finger, PHD-finger
SMARTSM002491.3E-8215268IPR001965Zinc finger, PHD-type
CDDcd155041.55E-25215267No hitNo description
PROSITE patternPS013590216267IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.5E-13551608IPR009057Homeodomain-like
PROSITE profilePS5007114.026554614IPR001356Homeobox domain
SuperFamilySSF466893.72E-13554620IPR009057Homeodomain-like
SMARTSM003893.1E-12557618IPR001356Homeobox domain
CDDcd000865.87E-11559615No hitNo description
PfamPF000465.7E-11561612IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MSTIGNTAVS PEKVARTTVL GHNNTASAGN MSENRGVEQS GDACENAVQN LNLSQCQEKT  60
PGRPRKRKST SGTPINSTRL LRSKSKEKSV ASEANNTVAT HEANEEKKRK RRKKKQSKHI  120
AVNEFTRIRG HLRYLLQRIK YEQTLIEAYS GEGWKGQSLE KIKLEKELQR AKAHIFRYKL  180
KIRDLFQRLD TLLAQGRLPA SLFDNEGEID SEDIFCAKCS AKDLPADNDI ILCDGACERG  240
FHQLCLEPPL LKEDIPPDDE GWLCPGCDCK VDCIDLLNDL QGTNLSVTDS WEKVYPKEAA  300
AAESGEKLDD ISGLPSDDSE DDDYNPENPD VEKNDSGDES SSDESDFFSA SEDLEEVPPK  360
DDEILGLPSE DSEDDDYSPD DPDKNEPVKA ESSSSDFTSD SEDLGLIVDA NRLPGDEQGV  420
SSSVDNSRPS SASQEDKPKA GRAKRNSLKV ELSDLMLSHS PVVSGKRHIE RLDYKKLHDE  480
TYGNESSDSS DEDFEGGPSP KVREIRSAKA AMTSPSSTPA DTKYQNGKQK GSRHTSDRGL  540
CEKLKIGGMD TSEPRSSGKK KTYGEGAIKR LYESFKENQY PDRDAKEKLG KELGLTAHQV  600
SKWFENARHC HRHSSRWNSI MSQKVSKESP SSPDIMGEPL GTESKSTTNN VLCNGVEKME  660
PPKQCLNGEK CHAIDNKSEG ELLIQEASGK KSRKPKAKND STDRGLDDTP SNKTYKKQNA  720
QVDTPNSQNV RRSSRLQKQG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111KKRKRR
2106113KKRKRRKK
3106114KKRKRRKKK
4107112KRKRRK
5108114RKRRKKK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592467.10.0PREDICTED: pathogenesis-related homeodomain protein-like
RefseqXP_009592468.10.0PREDICTED: pathogenesis-related homeodomain protein-like
SwissprotP487861e-135PRH_PETCR; Pathogenesis-related homeodomain protein
TrEMBLA0A1S4APU60.0A0A1S4APU6_TOBAC; pathogenesis-related homeodomain protein-like
STRINGXP_009592467.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.16e-90Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain