PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009592988.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 204aa MW: 23724.5 Da PI: 7.5662

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009592988.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.5	8.6e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W +eEde lv +++lG ++W++ a+ g++R++k+c++rw++yl XP_009592988.1 14 RGQWLEEEDESLVMIIAMLGERRWDALAKASGLRRSGKSCRLRWLNYL 61 899*******************************************97 PP
2	Myb_DNA-binding	51.5	2.3e-16	70	112	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l++++ kq+G++ W++Ia+ ++ gRt++++k++w+++l XP_009592988.1 70 ITADEEHLIIQLQKQFGNK-WSKIAEQLP-GRTDNEIKNYWRSHL 112 59***************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.47	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.6E-26	12	108	IPR009057	Homeodomain-like
SMART	SM00717	4.0E-11	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-13	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.3E-20	15	68	IPR009057	Homeodomain-like
CDD	cd00167	6.46E-8	17	61	No hit	No description
PROSITE profile	PS51294	26.037	62	116	IPR017930	Myb domain
SMART	SM00717	2.9E-14	66	114	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-24	69	115	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-14	70	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.20E-10	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MASKLTMHQD ELRRGQWLEE EDESLVMIIA MLGERRWDAL AKASGLRRSG KSCRLRWLNY 60 LRPNLKHGHI TADEEHLIIQ LQKQFGNKWS KIAEQLPGRT DNEIKNYWRS HLRKKALKYE 120 QESFGSNTSN SEQQSSTLKS DTVPSSHSDD YFSGKGDCSS AYSLAYSSND TTLLDWIPSW 180 SYEQSRMEHH MYFCSSNLCF CYPP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-25	11	116	1	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	5e-25	11	116	55	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	5e-25	11	116	55	159	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009592988.1	1e-152	PREDICTED: myb-related protein MYBAS1-like
Refseq	XP_018624159.1	1e-152	PREDICTED: myb-related protein MYBAS1-like
Refseq	XP_018624160.1	1e-152	PREDICTED: myb-related protein MYBAS1-like
Swissprot	Q9SCP1	2e-49	MYB27_ARATH; Transcription factor MYB27
TrEMBL	A0A1S4D661	1e-141	A0A1S4D661_TOBAC; myb-related protein MYBAS1-like isoform X1
STRING	XP_009592986.1	1e-152	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	3e-51	myb domain protein 27

Publications ? help Back to Top
Albert NW, et al. A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots. Plant Cell, 2014. 26(3): p. 962-80 [PMID:24642943]