PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009593096.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 843aa MW: 93210.3 Da PI: 5.4053

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009593096.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	15.2	3.8e-05	615	675	1	54
TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 +rkRt ++++q+ +e++ ++ + ++++ e Ak+l ++t++q k+W Nr+a+ XP_009593096.1 615 KRKRTIMNEKQISLMEKALMDEPDMqrNKASLEFWAKELsvhgsEVTKSQLKNWLNNRKAR 675 79****************977761155678999***9***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-5	603	676	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.981	612	679	IPR001356	Homeobox domain
SMART	SM00389	1.4E-4	614	683	IPR001356	Homeobox domain
CDD	cd00086	2.32E-5	615	678	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0060195	Biological Process	negative regulation of antisense RNA transcription
GO:0005730	Cellular Component	nucleolus
GO:0003697	Molecular Function	single-stranded DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 843 aa Download sequence Send to blast
MKEEGASCST DPVARPIHPA LDLISAVKGL HGLSSQELSR LIREAENNIL QHIPDNGLNI 60 QIDVEKLARY LALHLIAVIL ASEANAGLLK YLLSGFQLLH SLSDLASRNP KIEQILLDDV 120 KVSEQLLDLA FYSLVILCTY SKVSNDMGLL HSTLVASSLY LLTVCISSQW HELAQVLLAY 180 YKELSSKGGV LLLAQAIMHL DVSPLVTLSS SIVAAVSRLK SKVLSILLNL CEAESLSYLD 240 EVASTPASLD LAKSIALEVL NLLKKMFGTG FQQSVAPSEK IYPKGQLQLN AMRLADIFSD 300 DSNFRSFITT HFTEVLTEIF SVVHGEFVSS WCSSDLPIRE EDATLEYDPF AAAGWVLDLF 360 PFSDQSNTMS IEPTFVPSHV PRLSYPHQRT SLLVKVLANL HCFVPDICKE EKDLFFNKFV 420 QFLRTKVSKT PEGFKSISDS HKAATVSRNL GSLLSHAESL IPAFLNEEDV QLLRVFITQL 480 ESLITPRACG ENRVQEAQNL GACLPPQLRE VAMDLNNRLN QLNSRINGEG QSGEAGMKAE 540 MTEQDKFIAT DIEMKDIEKD TQNVETSGSD SSSSRSRHPT DQAGKVEKIN CNGPGEGRED 600 EMVEASQHEE KQQRKRKRTI MNEKQISLME KALMDEPDMQ RNKASLEFWA KELSVHGSEV 660 TKSQLKNWLN NRKARLARAA KDGRTLSEGD NLDKHGGSLV LPPCDSPGSP VEDVGNLSAA 720 RENVQRVTDP VLSTCFTENP AAVSVASTET AKCMAGQYVV LVNDKAEEIG RGKVCQVSGK 780 WYQRDLEELG TCVVDIIDLK VDRSAKLPYP SELTGTSFDQ AERKFGFMRV LWQSSKLFVL 840 PAR

Sequence ? help Back to Top

Protein Sequence Length: 843 aa Download sequence Send to blast

MKEEGASCST DPVARPIHPA LDLISAVKGL HGLSSQELSR LIREAENNIL QHIPDNGLNI  60
QIDVEKLARY LALHLIAVIL ASEANAGLLK YLLSGFQLLH SLSDLASRNP KIEQILLDDV  120
KVSEQLLDLA FYSLVILCTY SKVSNDMGLL HSTLVASSLY LLTVCISSQW HELAQVLLAY  180
YKELSSKGGV LLLAQAIMHL DVSPLVTLSS SIVAAVSRLK SKVLSILLNL CEAESLSYLD  240
EVASTPASLD LAKSIALEVL NLLKKMFGTG FQQSVAPSEK IYPKGQLQLN AMRLADIFSD  300
DSNFRSFITT HFTEVLTEIF SVVHGEFVSS WCSSDLPIRE EDATLEYDPF AAAGWVLDLF  360
PFSDQSNTMS IEPTFVPSHV PRLSYPHQRT SLLVKVLANL HCFVPDICKE EKDLFFNKFV  420
QFLRTKVSKT PEGFKSISDS HKAATVSRNL GSLLSHAESL IPAFLNEEDV QLLRVFITQL  480
ESLITPRACG ENRVQEAQNL GACLPPQLRE VAMDLNNRLN QLNSRINGEG QSGEAGMKAE  540
MTEQDKFIAT DIEMKDIEKD TQNVETSGSD SSSSRSRHPT DQAGKVEKIN CNGPGEGRED  600
EMVEASQHEE KQQRKRKRTI MNEKQISLME KALMDEPDMQ RNKASLEFWA KELSVHGSEV  660
TKSQLKNWLN NRKARLARAA KDGRTLSEGD NLDKHGGSLV LPPCDSPGSP VEDVGNLSAA  720
RENVQRVTDP VLSTCFTENP AAVSVASTET AKCMAGQYVV LVNDKAEEIG RGKVCQVSGK  780
WYQRDLEELG TCVVDIIDLK VDRSAKLPYP SELTGTSFDQ AERKFGFMRV LWQSSKLFVL  840
PAR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214463	1e-144	AC214463.1 Solanum lycopersicum chromosome 9 clone C09HBa0080D01, complete sequence.
GenBank	HG975448	1e-144	HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBank	HG975521	1e-144	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009593096.1	0.0	PREDICTED: nodulin homeobox isoform X2
TrEMBL	A0A1U7WEM8	0.0	A0A1U7WEM8_NICSY; uncharacterized protein LOC104227794 isoform X2
STRING	XP_009593093.1	0.0	(Nicotiana tomentosiformis)