PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009593275.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 223aa    MW: 25659.1 Da    PI: 9.9159
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009593275.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.26.4e-3157114359
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                     +v+YkeClkNhAas+Gg++vDGCgEf+p++++  +++++lkC  CgCHRnFHRr+ ++
  XP_009593275.1  57 AVTYKECLKNHAASIGGYTVDGCGEFIPTPDAIaADPTSLKCDVCGCHRNFHRRKRDD 114
                     799***************************99999*******************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-1558106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.5E-2658112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-2759111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.34360111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.8E-28136204IPR009057Homeodomain-like
SuperFamilySSF466893.23E-19138204IPR009057Homeodomain-like
TIGRFAMsTIGR015653.8E-24143199IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDSTYSIPTR NHIPTKTPDS EKDFPPYPQV PLKPLSFTNV TSKKHHQVHN HQPPSAAVTY  60
KECLKNHAAS IGGYTVDGCG EFIPTPDAIA ADPTSLKCDV CGCHRNFHRR KRDDDFMDFR  120
HHHAQVATPA TPTALKPEKP RRRRRFRTKF SQEQKNRMYS FSEKLGWKLQ KCDEAMVEEF  180
CNEIGVGKGV FRVWMHNNKS TLGKKGFPKC QQQYQTVPYN NKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-191442011875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593275.11e-170PREDICTED: zinc-finger homeodomain protein 10-like isoform X1
SwissprotQ9LXG02e-52ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A1S4A3N01e-168A0A1S4A3N0_TOBAC; zinc-finger homeodomain protein 10-like
STRINGXP_009593275.11e-169(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-39zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]