PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009593420.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 246aa MW: 28292.2 Da PI: 8.8274

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009593420.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.8	4.7e-41	159	235	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq++gC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q+ XP_009593420.1 159 CQADGCNADLTHAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHVLSEFDNGKRSCRKRLADHNRRRRKNQQ 235 **************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.8E-35	152	220	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.103	156	233	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.72E-38	157	234	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.3E-31	159	232	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MLDYEWGIGE ETTQETDQND QFFDPFVNPH AHFPPISNHP DQRQQQQQIQ NHQFPQFQTT 60 PNNNHFNSLY NPHTNDVPYS QTHHTSMLSL QPTGSAGFNM VLPKSEPQFV GGIDFTNTSR 120 IGLNLGGRTY FASSEDDFVN RLFRRTRAVE GGSVNSPKCQ ADGCNADLTH AKHYHRRHKV 180 CEFHSKAATV IAAGLTQRFC QQCSRFHVLS EFDNGKRSCR KRLADHNRRR RKNQQVINKK 240 QPQLES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-31	152	232	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269\|PubMed:12671094, ECO:0000269\|PubMed:16095614, ECO:0000269\|PubMed:17093870}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LC073297	0.0	LC073297.1 Nicotiana tabacum NtabSPL8 mRNA for squamosa promoter binding protein NtabSPL8, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009593420.1	0.0	PREDICTED: squamosa promoter-binding-like protein 8
Refseq	XP_009593422.1	0.0	PREDICTED: squamosa promoter-binding-like protein 8
Swissprot	Q8GXL3	5e-75	SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBL	A0A240EUR2	0.0	A0A240EUR2_TOBAC; Squamosa promter-binding-like protein 8
STRING	XP_009593420.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4846	23	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	9e-74	squamosa promoter binding protein-like 8

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xing S, et al. SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility. Plants (Basel), 2013. 2(3): p. 416-28 [PMID:27137384]