PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009593586.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 175aa MW: 19952 Da PI: 10.3004

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009593586.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.9	1.9e-53	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yL+kkv++ +l++ ++i+ev++yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++++ XP_009593586.1 15 LPPGFRFHPTDEELVVHYLEKKVASAPLSV-TIIAEVHLYKFDPWELPSKANFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIFTS 108 79**************************.89***********99999************************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+kktL+fy+g+ kg k++Wvmheyrl XP_009593586.1 109 nGTKKIGVKKTLIFYRGKPLKGMKSNWVMHEYRL 142 67788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-59	9	147	IPR003441	NAC domain
PROSITE profile	PS51005	55.858	15	158	IPR003441	NAC domain
Pfam	PF02365	7.0E-29	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MESTGLMSGS NHLQLPPGFR FHPTDEELVV HYLEKKVASA PLSVTIIAEV HLYKFDPWEL 60 PSKANFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPIFTSNG TKKIGVKKTL 120 IFYRGKPLKG MKSNWVMHEY RLVDNNSSLT KKCSLRVSLM IGYCVGFTRK TVQVQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-63	12	144	17	147	NAC domain-containing protein 19
3swm_B	2e-63	12	144	17	147	NAC domain-containing protein 19
3swm_C	2e-63	12	144	17	147	NAC domain-containing protein 19
3swm_D	2e-63	12	144	17	147	NAC domain-containing protein 19
3swp_A	2e-63	12	144	17	147	NAC domain-containing protein 19
3swp_B	2e-63	12	144	17	147	NAC domain-containing protein 19
3swp_C	2e-63	12	144	17	147	NAC domain-containing protein 19
3swp_D	2e-63	12	144	17	147	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009593583.1	1e-115	PREDICTED: NAC transcription factor 56
Refseq	XP_016462374.1	1e-115	PREDICTED: NAC transcription factor 56-like
Swissprot	A2YMR0	1e-81	NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBL	A0A1S3ZDG8	1e-113	A0A1S3ZDG8_TOBAC; NAC transcription factor 56-like
STRING	XP_009593583.1	1e-114	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	5e-81	NAC domain containing protein 25