PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009593617.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 326aa    MW: 35944.6 Da    PI: 10.0854
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009593617.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.27.8e-1736120186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  v +L+ea++ ++   +r+klk+++We+v+k++++rg  +rspk   qCk+k+e+++kry+ + +++ +      s++p++ +l+
  XP_009593617.1  36 EWSEGAVSCLLEAYEAKWILRNRAKLKGQDWEDVAKHVSARGNsTRSPKtqtQCKNKIESMKKRYRSESATAADA-----SSWPLYPRLD 120
                     5*************************************666654666543339*****************99984.....57****9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-2034120No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDQEISSKDD FFPRNKQQNY HAATGNNTSD RLKRDEWSEG AVSCLLEAYE AKWILRNRAK  60
LKGQDWEDVA KHVSARGNST RSPKTQTQCK NKIESMKKRY RSESATAADA SSWPLYPRLD  120
LLLRGNNASA ASTSVIPPPP PAVVEPPQPA AVLPPPPIPV PPPPPPPLPT AVPIGNGGQN  180
SNGSNGVDRA AKEDIMDAKL SDNAASDKHA MDTNSSTPAL YSDDKSKSKN VKLRSMEKKS  240
KNKRKRAEGW EIGESIRLLA EVVVRSEQAR METMREIERM RAEAEAKRGE MDLKRTEIIA  300
NTQLEIAKLF ASITKGVDPS LRIGRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-106HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593617.10.0PREDICTED: trihelix transcription factor ASIL2
RefseqXP_016485756.10.0PREDICTED: trihelix transcription factor ASIL2-like
RefseqXP_018624331.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A1S4BA190.0A0A1S4BA19_TOBAC; trihelix transcription factor ASIL2-like
STRINGXP_009593617.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122511620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.16e-56sequence-specific DNA binding transcription factors