PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009593982.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 78aa    MW: 8909.72 Da    PI: 12.182
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009593982.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.82.1e-161763146
                    S---SHHHHHHHHHHHHHHHHHHHHHH.HHHHT-EEEEEEE-TTSEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeEL.SvLCdaevaviifsstgkl 46
                    k+i  +s r vtfskRr+g++KKA EL S   d++va+++fs+tg +
  XP_009593982.1 17 KKITKESSRMVTFSKRRKGLFKKAVELqSKTIDTQVAILVFSPTGMV 63
                    679999*********************88888************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.409970IPR002100Transcription factor, MADS-box
SMARTSM004327.6E-14969IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.06E-161065IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-101131IPR002100Transcription factor, MADS-box
PfamPF003194.2E-181864IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-103146IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MPSFRKMGTG KKKIEIKKIT KESSRMVTFS KRRKGLFKKA VELQSKTIDT QVAILVFSPT  60
GMVTRHRGKR KGKERTGI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593982.11e-47PREDICTED: agamous-like MADS-box protein AGL23
TrEMBLM1AST49e-18M1AST4_SOLTU; Uncharacterized protein
STRINGXP_009593982.16e-47(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.21e-09AGAMOUS-like 71