PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009594814.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 247aa MW: 25894.8 Da PI: 8.5116

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009594814.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.4	5.1e-38	29	121	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.....k 89 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s ++s+ +ss + k XP_009594814.1 29 VKKPPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStLSVSLRNSSVSSSLSapldyK 121 79******************************************************************8886444443333322222334321 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.675	34	88	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.4E-34	34	125	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MSTSVEANGG ATLTQQHSSD AGNSGALVVK KPPAKDRHSK VDGRGRRIRM PIVCAARVFQ 60 LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTIPASFST LSVSLRNSSV SSSLSAPLDY 120 KSSSQPSISP PPFLLGKRLR PEDDDGSGDK DDASNGATVV GPTAGFWAVP ARPDFGQVWS 180 FAPPPPPPEM VAPTHSSAAR FLQQQMGEES AARLGNYFPI AQGHLNLLAS LSGSAPPSSG 240 RRDDDGN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009594814.1	1e-179	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	1e-82	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1J6JAK1	1e-150	A0A1J6JAK1_NICAT; Transcription factor tcp7
STRING	XP_009594814.1	1e-178	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-65	TCP family protein