PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009594956.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 204aa    MW: 24104.5 Da    PI: 9.7251
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009594956.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.12.5e-32261182103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d++++++isws +g+sf+++d+ ++ +k+Lp+yFkh+n++SF+ QLn YgFkk+  ++         we++h +F+ gkk+ll++
  XP_009594956.1  26 FLTKTYEMVDDPNTNSIISWSLTGTSFIIWDHIRLCSKLLPQYFKHENLSSFIYQLNNYGFKKIGLQK---------WEYEHYWFQPGKKQLLSN 111
                     9***************************************************************9998.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     ikr++++
  XP_009594956.1 112 IKRRNQN 118
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.1E-4222115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.1E-3223115IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.8E-2823115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.9E-182649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-2826115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-186476IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-187789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MATNNISQFS GSDGAIVLRN PRIPPFLTKT YEMVDDPNTN SIISWSLTGT SFIIWDHIRL  60
CSKLLPQYFK HENLSSFIYQ LNNYGFKKIG LQKWEYEHYW FQPGKKQLLS NIKRRNQNQK  120
VQEHCYQENY CNGVETELRS QRDFNVTLMS EIEKMKEKQD DLANGIASLR EYLEKSDAKF  180
RKLLFFLARG IKQVTKKRKV EDTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-242311526129Heat shock factor protein 1
5d5v_B3e-242311526129Heat shock factor protein 1
5d5v_D3e-242311526129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594956.11e-153PREDICTED: heat stress transcription factor A-9-like
TrEMBLA0A1S3YR271e-147A0A1S3YR27_TOBAC; heat stress transcription factor A-9-like
STRINGXP_009594956.11e-152(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13740910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.11e-44heat shock transcription factor A7A