PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009595701.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 206aa    MW: 23603 Da    PI: 8.6911
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009595701.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.24.5e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krie+ks rqvtfskRr+g+lKKA+ELS+LCda+vav++fs++++ly++ss
  XP_009595701.1  9 KRIEDKSSRQVTFSKRRKGLLKKAKELSILCDADVAVVVFSNRDRLYDFSS 59
                    79***********************************************96 PP
2K-box553.4e-19881701799
           K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      + ++a      + Lq+  R+l    +++Ls+ +L +Le+qL ++l ++Rs K++l++e+i+ l++kek l+eenk L++k++
  XP_009595701.1  88 EHSKYASFMTVGQLLQTVERQLEEPAVDDLSVTDLVHLENQLPTALMQVRSSKTHLMIESIKSLREKEKLLSEENKHLENKIA 170
                     34455566677789******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.02161IPR002100Transcription factor, MADS-box
SMARTSM004329.2E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-30279IPR002100Transcription factor, MADS-box
CDDcd002657.83E-36273No hitNo description
PRINTSPR004044.6E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.90685175IPR002487Transcription factor, K-box
PfamPF014867.3E-1599169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0010048Biological Processvernalization response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MGRKKVEIKR IEDKSSRQVT FSKRRKGLLK KAKELSILCD ADVAVVVFSN RDRLYDFSST  60
NSLTEIVHRY HSHVEAEKES SAEVLDTEHS KYASFMTVGQ LLQTVERQLE EPAVDDLSVT  120
DLVHLENQLP TALMQVRSSK THLMIESIKS LREKEKLLSE ENKHLENKIA TTKNKREVKN  180
EMALDFTNLA PASMNCQQQK ATLNFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-20187187Myocyte-specific enhancer factor 2B
1tqe_Q1e-20187187Myocyte-specific enhancer factor 2B
1tqe_R1e-20187187Myocyte-specific enhancer factor 2B
1tqe_S1e-20187187Myocyte-specific enhancer factor 2B
6c9l_A1e-20187187Myocyte-specific enhancer factor 2B
6c9l_B1e-20187187Myocyte-specific enhancer factor 2B
6c9l_C1e-20187187Myocyte-specific enhancer factor 2B
6c9l_D1e-20187187Myocyte-specific enhancer factor 2B
6c9l_E1e-20187187Myocyte-specific enhancer factor 2B
6c9l_F1e-20187187Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595701.11e-150PREDICTED: agamous-like MADS-box protein AGL27 isoform X1
TrEMBLA0A1S3XF591e-146A0A1S3XF59_TOBAC; agamous-like MADS-box protein AGL27 isoform X1
STRINGXP_009595701.11e-149(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65060.12e-41MIKC_MADS family protein