PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009595781.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 277aa MW: 31584.1 Da PI: 9.403

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009595781.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.6	1.2e-27	136	190	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+ Wt++LHe+F e+v++LGG++kAtPk+il+lm+ L+++++kSHLQkYR+ XP_009595781.1 136 KRRITWTQDLHEQFCECVNRLGGAKKATPKAILKLMNCYELSISNIKSHLQKYRV 190 689***************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.7E-15	133	190	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-24	134	191	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-21	136	190	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-7	140	189	IPR001005	SANT/Myb domain
Pfam	PF14379	6.6E-16	223	269	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MMELEMYDTA STSNKPLNKY DLADENFKSR DTLHSLVQSS FSCRHKPESL AKDLLHHKHR 60 MWQQNKSALT GAKTLRDPYL SMAARGSQVG KDSFKSRIIK PCCVCQLEKK PQSPPNESVC 120 ISSSNVTPER AETTKKRRIT WTQDLHEQFC ECVNRLGGAK KATPKAILKL MNCYELSISN 180 IKSHLQKYRV TCDVTVSPKD AVLTEGSPHR SSFPAQGPET YPQILEALKL QISVQQSLYE 240 QLEIQRSLQL RIEEQAKQLR AMFDRQAETN KNFQHSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-14	136	189	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-14	136	189	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-14	136	189	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-14	136	189	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-14	136	189	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-14	136	189	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-14	136	189	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-14	136	189	2	55	Protein PHOSPHATE STARVATION RESPONSE 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009595778.1	0.0	PREDICTED: protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1
Refseq	XP_009595780.1	0.0	PREDICTED: myb family transcription factor PHL5-like isoform X2
Swissprot	Q0WVU3	3e-35	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A1S3Z4Y3	0.0	A0A1S3Z4Y3_TOBAC; uncharacterized protein LOC107783015 isoform X2
TrEMBL	A0A1S3Z4Z5	0.0	A0A1S3Z4Z5_TOBAC; myb family transcription factor APL-like isoform X4
STRING	XP_009595777.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	1e-37	G2-like family protein