PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009595782.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 217aa    MW: 24569.2 Da    PI: 9.6546
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009595782.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.18e-2876130155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r+ Wt++LHe+F e+v++LGG++kAtPk+il+lm+   L+++++kSHLQkYR+
  XP_009595782.1  76 KRRITWTQDLHEQFCECVNRLGGAKKATPKAILKLMNCYELSISNIKSHLQKYRV 130
                     689***************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.84E-1573130IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-2574131IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-2176130IPR006447Myb domain, plants
PfamPF002499.9E-880129IPR001005SANT/Myb domain
PfamPF143794.4E-16163209IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MWQQNKSALT GAKTLRDPYL SMAARGSQVG KDSFKSRIIK PCCVCQLEKK PQSPPNESVC  60
ISSSNVTPER AETTKKRRIT WTQDLHEQFC ECVNRLGGAK KATPKAILKL MNCYELSISN  120
IKSHLQKYRV TCDVTVSPKD AVLTEGSPHR SSFPAQGPET YPQILEALKL QISVQQSLYE  180
QLEIQRSLQL RIEEQAKQLR AMFDRQAETN KNFQHSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-1576129255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-1576129255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-1576129255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-1576129255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-1576129255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-1576129255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-1576129255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-1576129255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595778.11e-161PREDICTED: protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1
RefseqXP_009595780.11e-162PREDICTED: myb family transcription factor PHL5-like isoform X2
SwissprotQ0WVU39e-36PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLA0A1S3Z4Z51e-159A0A1S3Z4Z5_TOBAC; myb family transcription factor APL-like isoform X4
STRINGXP_009595777.11e-160(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.14e-38G2-like family protein