PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009595879.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 508aa MW: 57200.4 Da PI: 9.4663

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009595879.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.6	5e-07	7	41	1	36
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36 + rW t+E+++l av ++G+ +W+ +a+++ Rt XP_009595879.1 7 KRRWGTWEELILGGAVLRHGTQDWNVVASELR-SRT 41 579****************************9.998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.3E-4	7	41	IPR009057	Homeodomain-like
SMART	SM00297	1.5E-13	272	376	IPR001487	Bromodomain
Gene3D	G3DSA:1.20.920.10	2.3E-15	275	398	IPR001487	Bromodomain
SuperFamily	SSF47370	7.72E-17	279	375	IPR001487	Bromodomain
Pfam	PF00439	4.5E-10	281	360	IPR001487	Bromodomain
PROSITE profile	PS50014	10.746	287	357	IPR001487	Bromodomain
CDD	cd04369	4.61E-13	294	371	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MVVGSGKRRW GTWEELILGG AVLRHGTQDW NVVASELRSR TICPYYFTPE EEFDQNFNSP 60 PCGQRVNLFA CKVKYEDLQK RYSGCNAWFE ELRKRRVEEL KRELQKSECS IGSLLTKIES 120 LKAERERSAQ IDYGSCHTES PAAVVKSEYM ESFGNDGVSA GSFTLDTRTK FSPEFESPAI 180 ASTKEIDRKL EWSESCEPAE TANGNGGVLR KRRSKRKRKD AVLDSKEVSV GESDNVCSIS 240 DISTSHCRET STSCDQSIKP TTTDDSKGGL SRLRDDDDLM AIFNSITQTE VAMIFRHRHD 300 SQKRARYKNI IRQHVDIETV RLRIANGSIK SAGELFRDLL LLTTNAIVYY SKRTREYKSA 360 MTLRDIVTKA YRDHYKFSYH KATSALLTFS TIGNLPVKPR SARPRPSKDK LQAKSCDNVN 420 SIAGTVGRDD HKPSDADSEV PLQSLLAATK GFKRRGKFNC GSVDGSVNRI TKVAEKKDTG 480 AKTRIEDHHS EMVTKERKRA CKGDLQVA

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MVVGSGKRRW GTWEELILGG AVLRHGTQDW NVVASELRSR TICPYYFTPE EEFDQNFNSP  60
PCGQRVNLFA CKVKYEDLQK RYSGCNAWFE ELRKRRVEEL KRELQKSECS IGSLLTKIES  120
LKAERERSAQ IDYGSCHTES PAAVVKSEYM ESFGNDGVSA GSFTLDTRTK FSPEFESPAI  180
ASTKEIDRKL EWSESCEPAE TANGNGGVLR KRRSKRKRKD AVLDSKEVSV GESDNVCSIS  240
DISTSHCRET STSCDQSIKP TTTDDSKGGL SRLRDDDDLM AIFNSITQTE VAMIFRHRHD  300
SQKRARYKNI IRQHVDIETV RLRIANGSIK SAGELFRDLL LLTTNAIVYY SKRTREYKSA  360
MTLRDIVTKA YRDHYKFSYH KATSALLTFS TIGNLPVKPR SARPRPSKDK LQAKSCDNVN  420
SIAGTVGRDD HKPSDADSEV PLQSLLAATK GFKRRGKFNC GSVDGSVNRI TKVAEKKDTG  480
AKTRIEDHHS EMVTKERKRA CKGDLQVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	217	RRSKRKR
2	211	219	RRSKRKRKD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016502128.1	0.0	PREDICTED: bromodomain-containing protein 8-like isoform X1
TrEMBL	A0A1S4CLM6	0.0	A0A1S4CLM6_TOBAC; bromodomain-containing protein 8-like isoform X1
STRING	XP_009595879.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5534	19	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	2e-18	DNA-binding bromodomain-containing protein