PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009595882.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 489aa    MW: 54977 Da    PI: 9.6902
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009595882.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.7e-07741136
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36
                     + rW t+E+++l  av ++G+ +W+ +a+++   Rt
   XP_009595882.1  7 KRRWGTWEELILGGAVLRHGTQDWNVVASELR-SRT 41
                     579****************************9.998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002492.0E-5743IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-4741IPR009057Homeodomain-like
CDDcd001670.00807956No hitNo description
SMARTSM002971.5E-13253357IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.1E-15256379IPR001487Bromodomain
SuperFamilySSF473707.2E-17260356IPR001487Bromodomain
PfamPF004394.2E-10262341IPR001487Bromodomain
PROSITE profilePS5001410.746268338IPR001487Bromodomain
CDDcd043694.25E-13275352No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MVVGSGKRRW GTWEELILGG AVLRHGTQDW NVVASELRSR TICPYYFTPE ACKVKYEDLQ  60
KRYSGCNAWF EELRKRRVEE LKRELQKSEC SIGSLLTKIE SLKAERERSA QIDYGSCHTE  120
SPAAVVKSEY MESFGNDGVS AGSFTLDTRT KFSPEFESPA IASTKEIDRK LEWSESCEPA  180
ETANGNGGVL RKRRSKRKRK DAVLDSKEVS VGESDNVCSI SDISTSHCRE TSTSCDQSIK  240
PTTTDDSKGG LSRLRDDDDL MAIFNSITQT EVAMIFRHRH DSQKRARYKN IIRQHVDIET  300
VRLRIANGSI KSAGELFRDL LLLTTNAIVY YSKRTREYKS AMTLRDIVTK AYRDHYKFSY  360
HKATSALLTF STIGNLPVKP RSARPRPSKD KLQAKSCDNV NSIAGTVGRD DHKPSDADSE  420
VPLQSLLAAT KGFKRRGKFN CGSVDGSVNR ITKVAEKKDT GAKTRIEDHH SEMVTKERKR  480
ACKGDLQVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192198RRSKRKR
2192200RRSKRKRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595882.10.0PREDICTED: bromodomain-containing protein 8-like isoform X3
TrEMBLA0A1S4CM590.0A0A1S4CM59_TOBAC; bromodomain-containing protein 8-like isoform X4
STRINGXP_009595879.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.12e-21DNA-binding bromodomain-containing protein