PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009595917.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 256aa    MW: 28709.5 Da    PI: 6.6401
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009595917.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.4e-18169203135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  XP_009595917.1 169 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 203
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169927.4E-812249IPR016679Transcription factor, GATA, plant
Gene3DG3DSA:3.30.50.105.4E-14162200IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.266163199IPR000679Zinc finger, GATA-type
SMARTSM004016.5E-16163213IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-15164227No hitNo description
CDDcd002021.42E-13168215No hitNo description
PROSITE patternPS003440169194IPR000679Zinc finger, GATA-type
PfamPF003207.0E-16169203IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDVYGVSAPD LFRIDDLLDF SNDEIFSINS NSSSTTATPD SQHHHHQPHS DNSSAATANY  60
YDALLPNCSD DFTDNLCVPS DDVAELEWLS NFVEDSFSNF PTNSITGTMN LSSNSTASFH  120
SRSRSKRSRS TSSWTSSLQN PNTTMKNKEI SVHTRERSSS MDDDVPRRCT HCASEKTPQW  180
RTGPLGPKTL CNACGVRFKS GRLVPEYRPA ASPTFVLTQH SNSHRKVMEL RRQKEMVHQQ  240
PPPTEEGMYG NHFRVC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121126RSRSKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1076910.0AB107691.1 Nicotiana tabacum AGP3 mRNA for AG-motif binding protein-3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595917.10.0PREDICTED: GATA transcription factor 4-like
SwissprotO497433e-72GATA4_ARATH; GATA transcription factor 4
TrEMBLQ76DY10.0Q76DY1_TOBAC; GATA transcription factor
STRINGXP_009595917.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57761935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.14e-63GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]