PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009596026.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 192aa MW: 21385.3 Da PI: 8.4802

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009596026.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.9	4e-16	17	63	2	52
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 y+GVr + +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++ +++ XP_009596026.1 17 VYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPNPEMAARAHDVGALA 63 59**998.******843...6****************987776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	6.5E-10	17	59	IPR001471	AP2/ERF domain
SMART	SM00380	5.9E-30	17	80	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.1E-29	17	75	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-20	17	75	IPR016177	DNA-binding domain
PROSITE profile	PS51032	21.509	17	74	IPR001471	AP2/ERF domain
CDD	cd00018	7.88E-28	18	74	No hit	No description
PRINTS	PR00367	1.1E-9	18	29	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-9	40	56	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MEAKKIKRIR ESSKHQVYRG VRMRNWGKWV SEIREPRKKS RIWLGTFPNP EMAARAHDVG 60 ALAIKDNGAT LNFPQLASSL PKPISLTPRD IQTAAAKTAS MQNFDSSRSL SSSLSTSSSL 120 LAIDSAMAVL GRTSEELTQI IELPRLGTSF DDTFDLKNDF VCADYPSPIW LSCEDELGAI 180 SSCFEPSLLW NY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-15	12	75	9	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018624993.1	1e-124	PREDICTED: dehydration-responsive element-binding protein 3-like
Swissprot	Q9LYD3	9e-64	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A1J6KI13	1e-95	A0A1J6KI13_NICAT; Dehydration-responsive element-binding protein 3
STRING	XP_009596026.1	1e-140	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	1e-64	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]