PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009596482.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 286aa MW: 32148.1 Da PI: 7.8863

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009596482.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.7	1.4e-29	27	86	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGse.....kAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH++Fv+av++LGG++ +AtPk++l+lm+vkgLtl+h+kSHLQkYRl XP_009596482.1 27 KPRLRWTADLHQHFVDAVTKLGGPDsfgftEATPKSVLRLMGVKGLTLYHLKSHLQKYRL 86 79******************997444447**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.0E-30	24	87	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.2E-21	27	87	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.45E-14	27	89	IPR009057	Homeodomain-like
Pfam	PF00249	7.6E-8	29	85	IPR001005	SANT/Myb domain
Pfam	PF14379	7.9E-21	132	178	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MYNNGSGVGR GGGFMYENEV VMTRDPKPRL RWTADLHQHF VDAVTKLGGP DSFGFTEATP 60 KSVLRLMGVK GLTLYHLKSH LQKYRLGQQA KRQNIAEQNK ENSGDSSGQF NLHSSGPSTS 120 SLSMNYMQGD VPIAEAVMSQ IEVQKRLQDQ LEVQQKLQMR IEAQGKYLQA ILSKAQKSIP 180 VNMNSPSATR AQLTDFDLPL SNLMDYANRE NQDDKIIDKR THDNIKEELQ RSNYIVEEEQ 240 KSNTVNLKLK EAFINFDLNS RSSYDFVGAN AAILEAKSLS DGRLET

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-17	27	85	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-17	27	85	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-17	27	85	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-17	27	85	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-32	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	1e-32	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009596482.1	0.0	PREDICTED: myb family transcription factor PHL11-like isoform X2
Swissprot	C0SVS4	2e-81	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A1S3XP13	0.0	A0A1S3XP13_TOBAC; myb family transcription factor APL-like
STRING	XP_009596482.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4416	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-79	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]