PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009596834.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 200aa MW: 22578.3 Da PI: 5.1164

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009596834.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.2e-05	51	73	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H++ H XP_009596834.1 51 YRCSFCKRGFSNAQALGGHMNIH 73 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.29E-6	49	77	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.2E-4	49	75	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0053	51	73	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.468	51	78	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	53	73	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MTSSPFYSNH LFPSSKPCPF NSMEIDPSNS EKPDQITWTS NELGLGHVKF YRCSFCKRGF 60 SNAQALGGHM NIHRKDRARL REFSSENLLS LDINNSFNPP PPPENDDSLQ GEVSYDEIIS 120 SPSKRPCVNT SKENDRSHEV IIGDLLQLPL FKETPLIKEA SNCVDRQVEE KGMQLNPVSE 180 LDLELRLGME PPHESSMKTL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009596834.1	1e-146	PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBL	A0A1S3YRA1	1e-125	A0A1S3YRA1_TOBAC; probable transcriptional regulator RABBIT EARS
STRING	XP_009596834.1	1e-146	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7463	16	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	4e-16	C2H2 family protein