PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009596860.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 297aa    MW: 33429.1 Da    PI: 9.9843
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009596860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP125.52.1e-3935112178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +CqvegC+ dls+akey+r+h+vC+ hsk+p+v+++g+ + fCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+
  XP_009596860.1  35 RCQVEGCSLDLSSAKEYYRKHRVCDSHSKCPKVTIAGVARHFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQQ 112
                     6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.3E-312997IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.37633110IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.27E-3734115IPR004333Transcription factor, SBP-box
PfamPF031102.2E-2936109IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
TIGGAKISSF AEKPVSSAAA AKKTKSSTQN APTPRCQVEG CSLDLSSAKE YYRKHRVCDS  60
HSKCPKVTIA GVARHFCQQC SRFHSLSEFD EKKRSCRRRL SDHNARRRKP QQEIIQLNSA  120
RLSSLFYDSR KPMNLVLNTP NWFTLELLQI LPGKALKKLI SLLALALQGP HRRGFQSRCQ  180
GIHVQYEYRT GISSWGSSEP ETVSLNHPTH VNQSSMPEQM MQAIPQGVPL MSCEYWQRGQ  240
PSSDPRDHTL AANSHASGIF QGIELFKPPF DTDFYLSTVD SGELQCFRRR TMLSFPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-25361091184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
191108KKRSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2606340.0KP260634.1 Nicotiana tabacum SBP-box 2 (SPL2) mRNA, complete cds.
GenBankLC0727210.0LC072721.1 Nicotiana tabacum NtabSPL2 mRNA for squamosa promoter binding protein spl2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226025.11e-144PREDICTED: squamosa promoter-binding-like protein 3
RefseqXP_019226026.11e-144PREDICTED: squamosa promoter-binding-like protein 3
TrEMBLA0A314KU741e-142A0A314KU74_NICAT; Squamosa promoter-binding-like protein 3
STRINGXP_009596860.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41292444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27360.43e-44squamosa promoter-like 11