PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009597146.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LSD
Protein Properties Length: 128aa    MW: 14200.8 Da    PI: 8.4322
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009597146.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1413.1e-13730124
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                    C+gCrt+L YPrGA++V+Ca+C++
  XP_009597146.1  7 CSGCRTILLYPRGATNVCCAVCNA 30
                    **********************98 PP
2zf-LSD148.11.9e-154670125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggCrtlL+ PrGA+sVRCa+C+tV
  XP_009597146.1 46 CGGCRTLLMHPRGATSVRCACCHTV 70
                    ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010534.0E-13432IPR005735Zinc finger, LSD1-type
PfamPF069432.0E-11730IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.3E-174373IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-134670IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MQSQLVCSGC RTILLYPRGA TNVCCAVCNA LTPVPPPGME MAQLICGGCR TLLMHPRGAT  60
SVRCACCHTV NLVPGTFFFR IKESHSLLLK FSFSSWKPSS YFSLSIFSYL AFENIYCILT  120
SICFTFFQ
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0132987e-82BT013298.1 Lycopersicon esculentum clone 134929F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597146.12e-89PREDICTED: protein LOL1-like
SwissprotQ93ZB17e-36LOL1_ARATH; Protein LOL1
TrEMBLA0A1S4D2293e-47A0A1S4D229_TOBAC; protein LOL2-like
TrEMBLA0A1S4DBD83e-47A0A1S4DBD8_TOBAC; protein LOL2-like
TrEMBLA0A1U7WYC93e-47A0A1U7WYC9_NICSY; protein LOL2-like isoform X1
STRINGXP_009597146.17e-89(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.11e-37lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]