PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009597321.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 257aa    MW: 29149.8 Da    PI: 10.2862
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009597321.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.43.9e-1194181597
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     +++++ l+++ l l+ +fa+e g+ +++  t+t++de   sW++kl    + +++++++ W++F  ang kegD +++  +  ++ ++ +kv+
  XP_009597321.1  94 TIKPYCLSKNFLQLSDPFAQEDGLRNRR-CTITIRDE-QMSWTFKL--YSSVSHTFIGGVWSKFYIANGFKEGDQIMLVIVA-NGNNPILKVY 181
                     5789999***************998765.5******5.579*****..88888899*******************9999766.5666777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-1188177IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-1288178IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-989182No hitNo description
PROSITE profilePS508639.06590186IPR003340B3 DNA binding domain
SMARTSM010192.6E-990184IPR003340B3 DNA binding domain
PfamPF023621.9E-894181IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MIYSWEIVWC SDMKETWSLK FQSLVQVNVK ENMNSLLKEL MKNKRKTIIL CKKITSQVNT  60
TEKPKLNIKS SHKAFPNVEA AQDMLLGRPH FICTIKPYCL SKNFLQLSDP FAQEDGLRNR  120
RCTITIRDEQ MSWTFKLYSS VSHTFIGGVW SKFYIANGFK EGDQIMLVIV ANGNNPILKV  180
YDLRTSASLQ REGKKPDLDT GRVSTRGFGI TGLIKTSDMP ATKAQVPSST SANANPHFIS  240
TIRPYFISRP SLVSNLN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018625339.11e-138PREDICTED: uncharacterized protein LOC104093296 isoform X1
TrEMBLA0A1U7W5121e-105A0A1U7W512_NICSY; B3 domain-containing protein REM2-like isoform X1
STRINGXP_009597321.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31615.11e-09B3 family protein