PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009597640.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 234aa    MW: 26005.1 Da    PI: 9.4974
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009597640.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-055577123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H+++H
  XP_009597640.1 55 YTCSFCKREFRSAQALGGHMNVH 77
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.58E-65281No hitNo description
PROSITE profilePS5015711.245582IPR007087Zinc finger, C2H2
SMARTSM003550.00385577IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-65578IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEKSSSFSSN YFKNQTIKEL NNNNNNKFKD SWDNSCEGTV DGDLIGGFLW PPRSYTCSFC  60
KREFRSAQAL GGHMNVHRRD RARLRLQSSP PKDNGTTSHY SLLNLNVEPN PSPNPNLNPS  120
FVSSPPSSPS RKFPPSVSTL PPLLSPSFSS STSGGSEMRK WGKDGVPLNH LSQLRNGDLT  180
KRGSAKFEKI GSFLQGKECC EVVKRSEFLR LDLGIGLLSE SKEDLDLELR LGYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-145077229superman protein
2l1o_A5e-145077229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2278440.0GQ227844.1 Nicotiana tabacum superman (SUP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597640.11e-170PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A1S3Z5L01e-168A0A1S3Z5L0_TOBAC; transcriptional regulator SUPERMAN-like
STRINGXP_009597640.11e-169(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.15e-25C2H2 family protein