PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009597649.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 470aa    MW: 53981 Da    PI: 9.6762
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009597649.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.84.5e-1456137589
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     +++s+ ++++ ++lp kf++++g+k+++   l+++ e+ rsW++kl    + +++++++ W eF +an++k+gD ++F+++ + e
  XP_009597649.1  56 TVRSYCFSKSYFRLPGKFTKANGLKNKK-CGLIIRGERQRSWNLKL--YTSYSQVYIGGKWGEFRDANDIKVGDRIMFEVVANGE 137
                     578999****************777544.47999************..66667889***********************887533 PP
2B355.41.1e-17202288596
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     ++++++l+++ l++p +fa++hg+  ++  t++++d + rsW+++l    ++  +++++GW++F+ an LkegD v+F  +  +++++ +k+
  XP_009597649.1 202 TMKPYYLSKHFLRVPSPFARQHGLRDRK-CTIMIRD-EQRSWTFTL--YSCGTVTYIGGGWRDFCIANCLKEGDRVMFGIVA-NGEKPILKF 288
                     57899999999***********999766.5999999.779******..888888*************************876.555566665 PP
3B354.62e-17347433596
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     ++++++l+++ l++p +fa++hg+  ++  t++++d + rsW+++l    +++ +++++GW+eF+ an LkegD v+F  +  +++++ +k+
  XP_009597649.1 347 TMKPYYLSKRFLRVPCPFAQQHGLRDRK-CTIMIRD-EQRSWTFTL--YSCGRFTYIGGGWREFCVANCLKEGDRVMFGIVA-NGEKPILKF 433
                     56889999999***********999765.5999999.779******..999999*************************876.555566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.5E-1350143IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.77152146IPR003340B3 DNA binding domain
SMARTSM010199.2E-952149IPR003340B3 DNA binding domain
SuperFamilySSF1019361.92E-1452143IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-1256138IPR003340B3 DNA binding domain
CDDcd100171.12E-1058131No hitNo description
SuperFamilySSF1019361.08E-19194288IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-19195288IPR015300DNA-binding pseudobarrel domain
CDDcd100172.52E-15197290No hitNo description
PROSITE profilePS5086311.392198291IPR003340B3 DNA binding domain
SMARTSM010197.0E-15199292IPR003340B3 DNA binding domain
PfamPF023625.0E-15202289IPR003340B3 DNA binding domain
SuperFamilySSF1019361.12E-19339433IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-19340433IPR015300DNA-binding pseudobarrel domain
CDDcd100171.41E-14342435No hitNo description
SMARTSM010191.1E-13343437IPR003340B3 DNA binding domain
PROSITE profilePS5086311.068343436IPR003340B3 DNA binding domain
PfamPF023628.1E-15347434IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MEFEVTIFDS SHCDREYAEY LQDEEDAHTV KDPSKKFEIK EAAPQNPIGQ SHVVCTVRSY  60
CFSKSYFRLP GKFTKANGLK NKKCGLIIRG ERQRSWNLKL YTSYSQVYIG GKWGEFRDAN  120
DIKVGDRIMF EVVANGERPI WKFHHLRKNA SLQPEGMKTN SDTERVSTPE KPKSNIISSR  180
EAVPNVEAAK DMHLGHPHFI CTMKPYYLSK HFLRVPSPFA RQHGLRDRKC TIMIRDEQRS  240
WTFTLYSCGT VTYIGGGWRD FCIANCLKEG DRVMFGIVAN GEKPILKFHD LRENALLRPE  300
GKKTNSDTER VSTQEKPKSN VISSREAVPN VEAAKDMHLG HPHFICTMKP YYLSKRFLRV  360
PCPFAQQHGL RDRKCTIMIR DEQRSWTFTL YSCGRFTYIG GGWREFCVAN CLKEGDRVMF  420
GIVANGEKPI LKFHDLRGNA SLQPEGKKIK LDAKSVSTQG ITDLKIRPQM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018625364.10.0PREDICTED: B3 domain-containing protein REM14-like
TrEMBLA0A1S3YP650.0A0A1S3YP65_TOBAC; B3 domain-containing protein REM14-like isoform X1
TrEMBLA0A1U7X3S60.0A0A1U7X3S6_NICSY; B3 domain-containing protein REM14-like isoform X1
STRINGXP_009597618.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.18e-28B3 family protein