PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009597868.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 244aa MW: 27564.6 Da PI: 5.3688

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009597868.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.3	8.3e-21	91	151	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++ +l +++e++V++WFqNrRa+ k+ XP_009597868.1 91 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKDITFELsqhgQISETNVYNWFQNRRARSKR 151 89***************99************************************97 PP
2	Wus_type_Homeobox	100.8	1e-32	91	153	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G tP+k++i++it eL+++G+i+++NV++WFQNr+aR+++kq XP_009597868.1 91 RQRWTPTPVQLQILERIFDQGNGTPSKQKIKDITFELSQHGQISETNVYNWFQNRRARSKRKQ 153 79***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.576	87	152	IPR001356	Homeobox domain
SMART	SM00389	6.6E-14	89	156	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.48E-18	89	154	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-16	89	154	IPR009057	Homeodomain-like
CDD	cd00086	2.52E-12	91	153	No hit	No description
Pfam	PF00046	1.3E-18	91	151	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MEWENQQQQP PQRAEDMNGA AGGGGGMFVK VMTDEQMEVL RKQIAVYAVI CEQLVDLHKS 60 MASQHDLAGT RLGNLYCDPL ITSAGHRISG RQRWTPTPVQ LQILERIFDQ GNGTPSKQKI 120 KDITFELSQH GQISETNVYN WFQNRRARSK RKQQGGGATN NVESEVETEV ESPNEKKTKP 180 EDLQSSHMPT SRTEEGSSNP TGSFDQLSFY AMSNPRMDQV IEKMEDPGSY HPYLHAENYD 240 MISQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	152	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009597868.1	0.0	PREDICTED: WUSCHEL-related homeobox 13-like isoform X1
Refseq	XP_016457345.1	0.0	PREDICTED: WUSCHEL-related homeobox 13-like isoform X1
Swissprot	Q5QMM3	3e-80	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A1S3YZ32	0.0	A0A1S3YZ32_TOBAC; WOX13a
STRING	XP_009597868.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5675	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	6e-76	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]