PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009598034.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 251aa    MW: 27634.3 Da    PI: 4.8007
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009598034.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.2e-173685255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ykGVr++  +g+WvAeIr+p   + r +r +lg+f   ++Aa a++aa++kl+g
  XP_009598034.1 36 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFENSYDAAVAYDAAARKLYG 85
                    69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.11E-173595No hitNo description
Gene3DG3DSA:3.30.730.105.0E-293694IPR001471AP2/ERF domain
PROSITE profilePS5103221.4433693IPR001471AP2/ERF domain
SMARTSM003804.4E-323699IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-203694IPR016177DNA-binding domain
PfamPF008472.5E-103685IPR001471AP2/ERF domain
PRINTSPR003673.5E-83748IPR001471AP2/ERF domain
PRINTSPR003673.5E-85975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSSTYSVERK TKKITQATSR KGCMRGKGGP ENASCTYKGV RQRTWGKWVA EIREPNRGAR  60
LWLGTFENSY DAAVAYDAAA RKLYGADAKL NLPHLYNKQA QAQAQAHNSR PNTMGLDNAG  120
GPVSAPPTCN PAAVYNVASP STWSMGNDHT SFYFNNDFGN NNFSTGDQDL VSFQFLDINQ  180
TAEEFGENNI NQNEGIGGEM WRDLNMNLPE IDDSSIWEEA KATTSFQEAV SDPGIYACNL  240
DDGINYPPWC G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-173793360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598034.10.0PREDICTED: dehydration-responsive element-binding protein 2D-like
TrEMBLA0A1S4DF010.0A0A1S4DF01_TOBAC; dehydration-responsive element-binding protein 2D-like
STRINGXP_009598034.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-39ERF family protein