PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009598166.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 492aa    MW: 54225 Da    PI: 9.5476
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009598166.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-056688123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C+k F r  nL+ H r H
  XP_009598166.1 66 FICEICNKGFQRDQNLQLHRRGH 88
                    89*******************88 PP
2zf-C2H2140.00015143165123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  XP_009598166.1 143 WKCEKCSKKYAVQSDWKAHTKTC 165
                     58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.42E-76588No hitNo description
Gene3DG3DSA:3.30.160.601.3E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0226688IPR015880Zinc finger, C2H2-like
PfamPF121715.9E-56688IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8456688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM0035589108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.42E-7138163No hitNo description
SMARTSM00355130143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MMSGDIFSIP SSVKGVVLPH HPQDVLLEPN PNPKSNSSSK KRRNLPDPDA EVIALSPKTL  60
MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLKQRNKQ EIVKKKVYIC PEKSCVHNDP  120
SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HTKTCGTREY KCDCGTLFSR  180
KDSFITHRAF CDALAEESAR ITSVGTCNNL NFNQQPNLAG GISQIGTGFA QDFSGMTSGN  240
SLHHQQQKPR LSLWLNQANN NSQLNNTLHM SAPSSNLFAS SSSTGLPDHM VQMQSPNNVF  300
GNQMQWAIDK NSAATTPATS MTKTLCSMYS DNQNQHPKSS TPMSATALLQ KASQIGSTKS  360
SPTFFTNTFG VMNSSSSSSN TPMFNTLSQN TSEMHQVFAK QSEEYNPTDN ELLNGCPNMS  420
SLANTKAINL DQALMQTGGM QTQAVSFNFD NSLTRDFLGM GNEGGRPFLT PELAKFASMT  480
SAMGLSHYSS GH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-38139204368Zinc finger protein JACKDAW
5b3h_F5e-38139204368Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ7183040.0AJ718304.1 Nicotiana tabacum cDNA-AFLP-fragment BSTT41-2-420, cultivar Bright Yellow 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598166.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X2
TrEMBLA0A1S3ZH970.0A0A1S3ZH97_TOBAC; zinc finger protein JACKDAW-like isoform X2
TrEMBLA0A1U7WMW10.0A0A1U7WMW1_NICSY; zinc finger protein JACKDAW-like isoform X2
STRINGXP_009598165.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-102C2H2-like zinc finger protein