PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009598275.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 398aa    MW: 43599.4 Da    PI: 7.3872
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009598275.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-174695255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  XP_009598275.1 46 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 95
                    69*******.**********93....35999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.08946103IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-2146103IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-2946102IPR001471AP2/ERF domain
SMARTSM003801.3E-3346109IPR001471AP2/ERF domain
PfamPF008479.9E-114695IPR001471AP2/ERF domain
CDDcd000185.85E-3046102No hitNo description
PRINTSPR003672.3E-94758IPR001471AP2/ERF domain
PRINTSPR003672.3E-96985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEDAMRRLNQ ESDLPLQTTT CTTKRSCGAN KRSLKDGGGS SVGAVRYRGV RRRPWGRYAA  60
EIRDPQSKER RWLGTFDTAE EAACAYDCAA RAMRGVKART NFVYPPPSPT QPTSTNDGLT  120
FLNIPNSFNY TCAKSFPYQA ALKDLSNRQF FHSSNYPPSY GSGIRGVNGT TVATSTQKSN  180
DSLNMLLFRE LLSSNPSNTT TTTTTSLSSN TGFNNNMPLY EQLPLMFSRN NASISLNSST  240
SDLMNHTCSS STFLPTTSNG IIPSSSVMTL PKIENIHSLN NNTCIHDDSG MDFFPSEPTD  300
SGLLEEALHG FFPKPKPIKS EPFPSSTKGE LSGVSNIPQQ INDGLNSGFE FSQTSSSFPM  360
YYQDFAANLQ VSSGDNMTGD IFQYPDLLNI FAAKLQNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2236102271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598275.10.0PREDICTED: ethylene-responsive transcription factor ESR1-like
TrEMBLA0A314L3590.0A0A314L359_NICAT; Uncharacterized protein
STRINGXP_009598275.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.13e-12DORNROSCHEN-like