PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009598326.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 239aa MW: 26810.6 Da PI: 4.9714

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009598326.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.4	1.1e-17	106	158	2	54
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ ++tkeq +Le+ F+++++++ ++++ LA++l+L rqV vWFqNrRa+ XP_009598326.1 106 RKKLRLTKEQSAVLEDSFKEHSTLNSKQKRNLATRLSLRPRQVEVWFQNRRAR 158 788899**********************************************9 PP
2	HD-ZIP_I/II	80	3.7e-26	106	164	1	58
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt.ktkq 58 +kk+rl+keq+++LE+sF+e+++L++++K +la++L l+prqv+vWFqnrRAR kq XP_009598326.1 106 RKKLRLTKEQSAVLEDSFKEHSTLNSKQKRNLATRLSLRPRQVEVWFQNRRARRiGVKQ 164 69**************************************************8414555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-17	94	156	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.807	102	158	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.29E-16	103	158	IPR009057	Homeodomain-like
SMART	SM00389	3.4E-14	104	166	IPR001356	Homeobox domain
Pfam	PF00046	4.6E-15	106	159	IPR001356	Homeobox domain
CDD	cd00086	1.24E-13	106	158	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MICNTRLSLS LLGSSGESTT PKRKSNQDQE LDINPFPSLT LCLSSSAVNS SVISAAVSSF 60 SNSSIKRERD ASFEEEVELD TNKVIISPKL DDVDQEQDED HEFGTRKKLR LTKEQSAVLE 120 DSFKEHSTLN SKQKRNLATR LSLRPRQVEV WFQNRRARRI GVKQIQASGD SGGTPNRGKG 180 KGEREREIDL PMLSLKSPNY NSNTNLTEIA ARVIEESNTE DETDSEFFFN DNNETFSCA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	110	TRKKLRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009598326.1	1e-174	PREDICTED: homeobox-leucine zipper protein HAT22-like
TrEMBL	A0A1U7XAE2	5e-81	A0A1U7XAE2_NICSY; homeobox-leucine zipper protein HAT22-like
STRING	XP_009598326.1	1e-173	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	4e-23	homeobox from Arabidopsis thaliana