PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009598355.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Whirly
Protein Properties Length: 241aa    MW: 26759.6 Da    PI: 10.6556
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009598355.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly201.21.3e-62652031139
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                     sv+k+kaal+ ++++ptf++ldsg +kl+r+G ++l++ ++++erkydWek+q falsatev++l+++++++sceffhdp++ +sn+G+vrk+l+
  XP_009598355.1  65 SVFKGKAALSAEPRLPTFSKLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLISIGTRDSCEFFHDPSMLSSNAGQVRKSLS 159
                     79********************************************************************************************* PP

          Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                      +P +dGsG+fv+lsv n+ +k+n++f+vPv+ aefav+r++++
  XP_009598355.1 160 FKPNADGSGYFVSLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFS 203
                     *****************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.1E-7553222IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544478.63E-6558239IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.6E-5966200IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MAILKLAGFL RPSRNQLLHK RLPGEGVRDS IWQHAINTLA GFSTVRQNIV ADAGKLTGRV  60
FAPYSVFKGK AALSAEPRLP TFSKLDSGGV KLNRRGVIML TFWPSVGERK YDWEKRQLFA  120
LSATEVGSLI SIGTRDSCEF FHDPSMLSSN AGQVRKSLSF KPNADGSGYF VSLSVVNNNL  180
KTNDRFTVPV TTAEFAVMRT AFSFALPHIM GWDRFTNQPS ESISQSPSKV VPQLMETEWD  240
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A1e-117502211172StWhy2
3n1i_A1e-117502211172protein StWhy2
3n1j_A1e-117502211172Protein StWhy2
3n1k_A1e-117502211172protein StWhy2
3n1l_A1e-117502211172protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2345040.0HM234504.1 Solanum tuberosum Why2 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598355.11e-179PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial isoform X1
RefseqXP_016508343.11e-179PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial-like isoform X1
SwissprotD9J0341e-160WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A1S4D4S41e-177A0A1S4D4S4_TOBAC; single-stranded DNA-bindig protein WHY2, mitochondrial-like isoform X1
STRINGXP_009598355.11e-178(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97822228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-94WHIRLY 2