PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009598898.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 204aa    MW: 23018.2 Da    PI: 5.8807
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009598898.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.81.8e-11108149446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      W ++E+ ll+++ +++G  +W+ +a+++g +++  qc++++++
   XP_009598898.1 108 WNADEEMLLLEGMEMYGLANWAEVAEHVG-TKSKLQCIDHYNT 149
                      *****************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002913.2E-104488IPR000433Zinc finger, ZZ-type
PfamPF005691.3E-104688IPR000433Zinc finger, ZZ-type
CDDcd023357.88E-244896No hitNo description
PROSITE profilePS5013510.8464891IPR000433Zinc finger, ZZ-type
SuperFamilySSF578509.18E-1548111No hitNo description
PROSITE patternPS0135705077IPR000433Zinc finger, ZZ-type
SuperFamilySSF466894.86E-13100154IPR009057Homeodomain-like
PROSITE profilePS5129321.46103155IPR017884SANT domain
SMARTSM007171.4E-10104153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-8107150IPR009057Homeodomain-like
CDDcd001674.35E-12108150No hitNo description
PfamPF002491.2E-11108149IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGRSRAVHQS ADDDPSQRSK RKRTVPNVEN FDTAAAGQVL SDGKKALYHC NYCNKDISGR  60
IRIKCAVCSD FDLCVECFSV GAEVQPHKSN HLYRVMDNLS FPLICADWNA DEEMLLLEGM  120
EMYGLANWAE VAEHVGTKSK LQCIDHYNTI YINSPCFPLP DMSHVMGKSR EELLAMAKEQ  180
VEVCRSWPDP LSVNKVLSLK SDWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E1e-36481635120Transcriptional adapter 2
6cw3_G1e-36481635120Transcriptional adapter 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0146080.0BT014608.1 Lycopersicon esculentum clone 134091F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598898.11e-153PREDICTED: transcriptional adapter ADA2-like isoform X2
SwissprotQ75LL63e-90TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A1S3XXH21e-132A0A1S3XXH2_TOBAC; Transcriptional adapter
STRINGXP_009803647.11e-131(Nicotiana sylvestris)
STRINGXP_009598897.11e-134(Nicotiana tomentosiformis)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]