PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009598899.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 177aa    MW: 19820.3 Da    PI: 7.4734
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009598899.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.9e-08108142439
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 
                      W ++E+ ll+++ +++G  +W+ +a+++g ++tl q
   XP_009598899.1 108 WNADEEMLLLEGMEMYGLANWAEVAEHVG-TKTLHQ 142
                      *****************************.999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002913.2E-104488IPR000433Zinc finger, ZZ-type
PfamPF005691.1E-104688IPR000433Zinc finger, ZZ-type
CDDcd023352.69E-244896No hitNo description
PROSITE profilePS5013510.8464891IPR000433Zinc finger, ZZ-type
SuperFamilySSF578505.3E-1548111No hitNo description
PROSITE patternPS0135705077IPR000433Zinc finger, ZZ-type
SuperFamilySSF466891.87E-8100157IPR009057Homeodomain-like
PROSITE profilePS5129315.109103154IPR017884SANT domain
SMARTSM007171.6E-4104152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-5107141IPR009057Homeodomain-like
PfamPF002492.9E-7108142IPR001005SANT/Myb domain
CDDcd001677.84E-9108149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MGRSRAVHQS ADDDPSQRSK RKRTVPNVEN FDTAAAGQVL SDGKKALYHC NYCNKDISGR  60
IRIKCAVCSD FDLCVECFSV GAEVQPHKSN HLYRVMDNLS FPLICADWNA DEEMLLLEGM  120
EMYGLANWAE VAEHVGTKTL HQRLQYEKLN LRSISLGHVS RYGKEQRGTS CHGQGAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E2e-3048138595Transcriptional adapter 2
6cw3_G2e-3048138595Transcriptional adapter 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0146081e-168BT014608.1 Lycopersicon esculentum clone 134091F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598899.11e-132PREDICTED: transcriptional adapter ADA2-like isoform X3
SwissprotQ75LL66e-64TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A1S3XXH25e-98A0A1S3XXH2_TOBAC; Transcriptional adapter
STRINGXP_009803647.12e-97(Nicotiana sylvestris)
STRINGXP_009598897.11e-100(Nicotiana tomentosiformis)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]