PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009599822.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 971aa MW: 106472 Da PI: 6.2659

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009599822.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.5	3.1e-29	565	616	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_009599822.1 565 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 616 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.53	555	636	IPR003035	RWP-RK domain
Pfam	PF02042	3.3E-26	568	616	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.08E-20	875	961	No hit	No description
SMART	SM00666	6.1E-23	876	958	IPR000270	PB1 domain
PROSITE profile	PS51745	19.935	876	958	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.7E-22	877	957	No hit	No description
CDD	cd06407	8.87E-32	877	957	No hit	No description
Pfam	PF00564	2.4E-16	877	957	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 971 aa Download sequence Send to blast
MLPGRLIRFS LQQRLFRLIL RRHFCLVLLF GDFPMISRKN LPEIHSPVLS VSPVTLDLVL 60 LVYTDDPEAT TETVSVNADK GRLPSPVLEL APRDYPNGSC IIKERMTQAL RYFKESTGER 120 VLAQVWAPVK DAGRYVLTTS GQPFVLDPDC NGLHQYRTVS LMYMFAADGE TGGVLGLPGR 180 VFRLKLPEWT PNVQYYSSKE FPRLDHALHY NVRGTLALPV FEPSGQSCLG VLELIMTSQK 240 INYAAEVDKV CKALETVNLK SSEILDHPNT QVYVMGYMNQ ICNEGRQNAL VEILEILTAV 300 CETYQLPLAQ TWVPCRHRSV LADGGGLKKS CSSFDGSCMG QICMSTTDVA FYVVDAHMWG 360 FREACAEHHL QKGQGVAGRA YASQKSCFCE DITQFCKTEY PLVHYARLFG LTSCFAICLR 420 SSHTGNDDYI LEFFLPPNSG DYSDQQALLN SLLLTMKQHF RSLSIASGGE LEHDWSSVEI 480 IKASIEEKID AKPESVSAPK SLPQPTRLPN GWTHLDPLGE QQFSVESDVA KGAGSKCGTG 540 EAPNHVSPSD NKPTGKKSER KRGKAEKTIS LEVLQQYFAG SLKDAAKSLG VCPTTMKRIC 600 RQHGISRWPS RKINKVNRSL SKLKCVIESV QGTEGAFTLT SLAPNSFPAA VGSISWPACA 660 SGSNLPSSPL SKPSVFPEEK NEFSNHGTPE SHEEAEPSNQ MLGGRVTRKE EFTPQNGFLY 720 AEGSHKSRTG SVSREESAGT PTSQGSCQGS PSAGNEFSPQ NDLVNSPARE ACMKAGGSLE 780 AAHQTTTENN LAAAFLIPRP FIPERAQEPF GGMLVEDAGS SHDLRNLCSA GEAQVDERVP 840 EYSLPNPPFS DAIAKDPVYV PADTTPQYSA WPEVTFVTIK AAYREDIIRF RLCLNSGIVK 900 LKEEVAKRLK LELGTFDIKY LDDDLEVVSI SCDADLQECV DISLSSGSSI VRLLVHDIMS 960 NLGSSCESSG K

Sequence ? help Back to Top

Protein Sequence Length: 971 aa Download sequence Send to blast

MLPGRLIRFS LQQRLFRLIL RRHFCLVLLF GDFPMISRKN LPEIHSPVLS VSPVTLDLVL  60
LVYTDDPEAT TETVSVNADK GRLPSPVLEL APRDYPNGSC IIKERMTQAL RYFKESTGER  120
VLAQVWAPVK DAGRYVLTTS GQPFVLDPDC NGLHQYRTVS LMYMFAADGE TGGVLGLPGR  180
VFRLKLPEWT PNVQYYSSKE FPRLDHALHY NVRGTLALPV FEPSGQSCLG VLELIMTSQK  240
INYAAEVDKV CKALETVNLK SSEILDHPNT QVYVMGYMNQ ICNEGRQNAL VEILEILTAV  300
CETYQLPLAQ TWVPCRHRSV LADGGGLKKS CSSFDGSCMG QICMSTTDVA FYVVDAHMWG  360
FREACAEHHL QKGQGVAGRA YASQKSCFCE DITQFCKTEY PLVHYARLFG LTSCFAICLR  420
SSHTGNDDYI LEFFLPPNSG DYSDQQALLN SLLLTMKQHF RSLSIASGGE LEHDWSSVEI  480
IKASIEEKID AKPESVSAPK SLPQPTRLPN GWTHLDPLGE QQFSVESDVA KGAGSKCGTG  540
EAPNHVSPSD NKPTGKKSER KRGKAEKTIS LEVLQQYFAG SLKDAAKSLG VCPTTMKRIC  600
RQHGISRWPS RKINKVNRSL SKLKCVIESV QGTEGAFTLT SLAPNSFPAA VGSISWPACA  660
SGSNLPSSPL SKPSVFPEEK NEFSNHGTPE SHEEAEPSNQ MLGGRVTRKE EFTPQNGFLY  720
AEGSHKSRTG SVSREESAGT PTSQGSCQGS PSAGNEFSPQ NDLVNSPARE ACMKAGGSLE  780
AAHQTTTENN LAAAFLIPRP FIPERAQEPF GGMLVEDAGS SHDLRNLCSA GEAQVDERVP  840
EYSLPNPPFS DAIAKDPVYV PADTTPQYSA WPEVTFVTIK AAYREDIIRF RLCLNSGIVK  900
LKEEVAKRLK LELGTFDIKY LDDDLEVVSI SCDADLQECV DISLSSGSSI VRLLVHDIMS  960
NLGSSCESSG K

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009599822.1	0.0	PREDICTED: protein NLP6-like isoform X3
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A1S3XA72	0.0	A0A1S3XA72_TOBAC; protein NLP6-like isoform X5
STRING	XP_009599820.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]