PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009600027.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 522aa    MW: 58510.3 Da    PI: 5.5064
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009600027.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.1e-16230289155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++t+e+Aa+a++ a++k++g
  XP_009600027.1 230 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDTEEKAARAYDLAALKYWG 289
                     78*******************655454478446*************************98 PP
2AP246.68.4e-15334383355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_009600027.1 334 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 383
                     9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-17230299IPR016177DNA-binding domain
PfamPF008478.0E-13230289IPR001471AP2/ERF domain
CDDcd000189.65E-23230297No hitNo description
Gene3DG3DSA:3.30.730.101.4E-16231298IPR001471AP2/ERF domain
PROSITE profilePS5103219.704231297IPR001471AP2/ERF domain
SMARTSM003803.5E-29231303IPR001471AP2/ERF domain
PRINTSPR003678.1E-7232243IPR001471AP2/ERF domain
CDDcd000181.63E-24332393No hitNo description
SuperFamilySSF541711.37E-17332392IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-18333392IPR001471AP2/ERF domain
SMARTSM003806.2E-34333397IPR001471AP2/ERF domain
PROSITE profilePS5103219.137333391IPR001471AP2/ERF domain
PfamPF008471.6E-9334383IPR001471AP2/ERF domain
PRINTSPR003678.1E-7373393IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MSTWLGFSLS ADFNIGDDEE EEEEVIKDYQ SRNENQATGN DANLVEETPL SVMPSHYPFP  60
RCDTTTEDCW RYENHEMTSA TNLDEEGPKL EDFLGCCYSN SPPDHEQQIA EINVNIPPTI  120
NPSDHEQQFQ VMVPNGSFQS SNEFTNSTTG SVYHLPFDGA TSVSGFKSWL RQSAAAAPLI  180
SSAEENRTNN CQTLSLAAAP KKRPVAVKNV TGSREPVPRK SIDTFGQRTS QYRGVTRHRW  240
TGRYEAHLWD NSCRKEGQTR KGRQVYLGGY DTEEKAARAY DLAALKYWGA TTHINFPLNT  300
YEKELEEMKN MNRQEFVAHL RRKSSGFSRG ASMYRGVTRH HQHGRWQARI GRVAGNKDLY  360
LGTFSTQEEA AEAYDIAAIK FRGTSAVTNF DSSRYDVKRI CSSTTLIASD LAKRSPSKDS  420
GVSPSSFEDY NNSCTSSPQP ILAITNGEQL QQQPADNSFM DISNSRSSGS RSAEMSCDFG  480
VGLEYPQFED GRKRIDDNTQ SLGRIGNMDL VHPVPMFALW NQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600027.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-136AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A1S4C8Q90.0A0A1S4C8Q9_TOBAC; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_009600027.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87772127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-129AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]