PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009600070.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 618aa    MW: 69469.4 Da    PI: 6.0315
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009600070.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.9e-13432475755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + ErrRR++iN++f  L ++lP+      +K++K++ L +++eY+k+L+
  XP_009600070.1 432 ISERRRREKINERFMHLASMLPTG-----GKVDKISLLDETIEYMKELE 475
                     78*********************8.....8****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.9E-4815197IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.923425474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-12428479No hitNo description
SuperFamilySSF474596.67E-16429486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16430486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-16431480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-10432475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MAMGHQDQEG VPNNLRKQLA LAIRGIQWSY AIFWSTPVTK PGVLEWSDGY YNGDIKTRKT  60
VQAGEVNEDQ LGLHRTEQLR ELYSSLLTGE SEEDLQPQAK RPSAALSPED LTDTEWYFLV  120
CMSFVFNVGQ GLPGKTSATN QTIWLCNAHQ AESRVFSRSL LAKTVVCFPY LGGVIELGVT  180
ELVLEDPNLI QHIKNTFEVD HSVIPKRPNY VSNDAKDDTN VVCRKLDRNV LESDAYPVEI  240
NNSSPHDSSN GFVANQEAED SLMAVGIIGE TSQAQSWKFV DDNMSNGVHN SLNSSDCISQ  300
NYEKLSPLSS GEKETKPCPI DRQEHNQNKL HLLDHQGDDA QYQAVISTLL KSSDQLTLGP  360
HFRNINKKSS FAGWKNDTQM QRLGTAQKLL KKVLLEVPRM HGGVTHKFSR ENCKKNDLWR  420
PEVDDIDRSR VISERRRREK INERFMHLAS MLPTGGKVDK ISLLDETIEY MKELERRVQE  480
LEARSGKKTN DTAEQTSDNC GTSKFNDVKG SSLKRKACDL DEIELESRNE LLKGSSADSI  540
VINMIDKEVS IKMRCLWSEG LLLKIMEALT DLQMDCHTVQ SSKIDGILSI AIESKSNGLK  600
TVSVGAIREV LQRVVWKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-171620012195Transcription factor MYC3
4rqw_B3e-171620012195Transcription factor MYC3
4rs9_A3e-171620012195Transcription factor MYC3
4yz6_A3e-171620012195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1433438ERRRRE
2434439RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3057680.0KF305768.1 Nicotiana tabacum cultivar SamsunNN JAF13-like protein (JAF13a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600070.10.0PREDICTED: transcription factor EGL1 isoform X2
TrEMBLA0A1S3XEX30.0A0A1S3XEX3_TOBAC; transcription factor EGL1-like isoform X2
STRINGXP_009600065.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-170bHLH family protein